Factsheet for PGSC0003DMT400004319

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g088510.2.1	Tomato	nucleus	82.57	99.02
PGSC0003DMT400004228	Potato	cytosol	42.02	91.17
PGSC0003DMT400028286	Potato	cytosol	87.78	88.07
VIT_15s0021g00480.t01	Wine grape	cytosol	88.6	87.88
GSMUA_Achr11P...	Banana	cytosol	85.18	85.18
GSMUA_Achr2P18210_001	Banana	cytosol	84.69	85.11
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	85.34	85.06
KRH48908	Soybean	cytosol, nucleus	84.2	83.66
AT3G60190.1	Thale cress	cytosol	84.36	83.01
KRH66384	Soybean	cytosol, endoplasmic reticulum	83.55	83.01
Bra014507.1-P	Field mustard	cytosol	84.04	82.43
CDX89053	Canola	cytosol	84.04	82.43
CDY42672	Canola	cytosol	83.88	82.4
CDY41188	Canola	cytosol	83.71	82.24
CDX71832	Canola	cytosol	83.71	82.24
Bra007513.1-P	Field mustard	cytosol	83.55	82.08
Os10t0567800-01	Rice	plasma membrane	82.57	82.04
GSMUA_AchrUn_...	Banana	cytosol	83.06	81.08
KXG38886	Sorghum	cytosol	82.57	80.48
Zm00001d030005_P002	Maize	cytosol, mitochondrion	52.12	79.6
TraesCS1D01G216700.2	Wheat	cytosol	80.46	79.04
TraesCS1B01G227700.1	Wheat	cytosol	80.29	78.88
TraesCS1A01G213900.2	Wheat	cytosol	80.13	78.72
PGSC0003DMT400004655	Potato	cytosol	77.04	77.54
EER98546	Sorghum	cytosol	78.34	77.08
Zm00001d005306_P002	Maize	cytosol, extracellular, mitochondrion	78.5	76.75
CDY23444	Canola	cytosol	76.87	76.38
CDY30477	Canola	cytosol	76.71	76.21
Os09t0572900-01	Rice	cytosol, plasma membrane	77.52	76.04
Bra037643.1-P	Field mustard	cytosol	76.38	75.89
AT2G44590.3	Thale cress	cytosol	75.57	75.82
PGSC0003DMT400051417	Potato	cytosol	66.12	73.42
PGSC0003DMT400000646	Potato	cytosol	71.66	72.13
HORVU1Hr1G054560.1	Barley	mitochondrion	79.8	71.22
PGSC0003DMT400088564	Potato	cytosol	5.86	29.27
PGSC0003DMT400065607	Potato	cytosol	9.45	28.29
PGSC0003DMT400064542	Potato	cytosol	26.06	23.7
PGSC0003DMT400050652	Potato	cytosol	22.15	22.11
PGSC0003DMT400095128	Potato	cytosol	15.47	21.64
PGSC0003DMT400064541	Potato	cytosol	21.34	21.41
PGSC0003DMT400072601	Potato	cytosol	21.01	20.84
PGSC0003DMT400064491	Potato	cytosol	10.91	16.92
PGSC0003DMT400014025	Potato	cytosol	20.36	16.21
PGSC0003DMT400032399	Potato	plastid	19.38	14.42
PGSC0003DMT400094747	Potato	cytosol	8.14	12.11

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:102584195	MapMan:22.1.7.1	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom
InterPro:IPR020850	InterPro:IPR030381	UniProt:M0ZN84	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031
PFAM:PF02212	EnsemblPlantsGene:PGSC0003DMG400001714	PGSC:PGSC0003DMG400001714	EnsemblPlants:PGSC0003DMT400004319	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF73	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	UniParc:UPI000295B692	RefSeq:XP_006354632.1	SEG:seg	:	:

Description

Dynamin [Source:PGSC_GENE;Acc:PGSC0003DMG400001714]

Coordinates

chr1:-:68350172..68358169

Molecular Weight (calculated)

68620.3 Da

IEP (calculated)

7.867

GRAVY (calculated)

-0.352

Length

614 amino acids

Sequence
(BLAST)

001: MESLIGLVNR IQRACTALGD YGGGDNAFSS LWDALPSVAV VGGQSSGKSS VLESIVGRDF LPRGSGIVTR RPLVLQLHKT DDGQQEYAEF GHMPRRRFTD
101: FGTVRKEIAD ETDRITGKTK QISPVPIHLS IYSPKVVNLT LIDLPGLTKV AVEGQSETIV EDIENMVRTY VGKPNCIILA VSPANQDIAT SDAIKLAREV
201: DPTGERTFGV LTKLDLMDKG TNALDVLEGR AYRLQHPWVG IVNRSQADIN KNVDMIYARR KEREYFDTSP DYGHLASKMG SEYLAKLLSK HLEQFIKARI
301: PSITSLINKS IDELESELDH LGRPIAVDAG AQLYTILELC RAFDKIFKEH LDGGRPGGDR IYGVFDNQLP AALRKLPFDR YLSVQNVRKV VSEADGYQPH
401: LIAPEQGYRR LIEGALNYFR GPAEASVDAV HFVLKELVRK SIGECQELKR FPSLQSTIAA ASNEALEKFR DEGRKTVVRL VDMESSYLTV DFFRKLPQEM
501: ETPKGGKPEA AAAVDRYGEG HFRRIGSNVS SYVNMVSDTL RNTLPKAVVY CQVKEAKQSL LNYFYTQIGK KEGKALSELL DEDPALMERR MQCAKRLELY
601: KKARDEIDSV AWVR

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.