Factsheet for PGSC0003DMT400094747

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064491	Potato	cytosol	49.88	52.02
PGSC0003DMT400095128	Potato	cytosol	38.01	35.76
PGSC0003DMT400064541	Potato	cytosol	49.64	33.5
PGSC0003DMT400050652	Potato	cytosol	49.88	33.5
PGSC0003DMT400072601	Potato	cytosol	49.88	33.28
PGSC0003DMT400064542	Potato	cytosol	50.36	30.81
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	30.99	22.98
TraesCS4D01G217900.1	Wheat	cytosol	32.69	20.36
TraesCS4B01G217700.1	Wheat	cytosol	31.23	20.22
Zm00001d028497_P001	Maize	cytosol	30.51	20.19
Zm00001d028495_P001	Maize	cytosol	32.93	20.18
EER95148	Sorghum	cytosol	32.69	19.94
Os03t0260000-01	Rice	cytosol	32.69	19.91
TraesCS4A01G086700.1	Wheat	cytosol	31.96	19.88
HORVU4Hr1G061820.3	Barley	plastid	32.45	19.71
TraesCS4D01G098800.1	Wheat	cytosol	31.96	19.3
TraesCS4A01G213700.1	Wheat	cytosol	27.6	19.26
Os04t0129900-01	Rice	cytosol	30.99	18.71
KXG39737	Sorghum	cytosol	28.81	18.2
PGSC0003DMT400004228	Potato	cytosol	8.47	12.37
PGSC0003DMT400004319	Potato	cytosol	12.11	8.14
PGSC0003DMT400028286	Potato	cytosol	11.62	7.84
PGSC0003DMT400000646	Potato	cytosol	11.14	7.54
PGSC0003DMT400004655	Potato	cytosol	11.14	7.54
PGSC0003DMT400051417	Potato	cytosol	9.69	7.23
PGSC0003DMT400014025	Potato	cytosol	11.86	6.36
PGSC0003DMT400088564	Potato	cytosol	1.21	4.07
PGSC0003DMT400032399	Potato	plastid	7.75	3.88
PGSC0003DMT400065607	Potato	cytosol	0.48	0.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400094747	EnsemblPlantsGene:PGSC0003DMG400044318	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005525	InterPro:Dynamin_SF	InterPro:Dynamin_central	PANTHER:PTHR11566	PANTHER:PTHR11566:SF135	PFAM:PF01031
PGSC:PGSC0003DMG400044318	SEG:seg	UniParc:UPI0002949203	UniProt:M1DUT3	MapMan:35.1	:

Description

Interferon-induced GTP-binding protein mx [Source:PGSC_GENE;Acc:PGSC0003DMG400044318]

Coordinates

chr11:+:42353733..42354974

Molecular Weight (calculated)

47393.9 Da

IEP (calculated)

6.525

GRAVY (calculated)

-0.056

Length

413 amino acids

Sequence
(BLAST)

001: MKKLLVEARL FETHALLSKM DKSMVSIPVL AHKLVQIQEN IISKCFLDIE KKINNKLAVN VAALNELPQH SGSVAEALAT FMRIQSLAIE SLKKIFLGVE
101: FDEYTEDFEK HCAAKLSELI DLELKQYSVE LRSKYPDEKE DNLFVELMFL NEAQRIGFPD FLDVLQKNVR DISATTEEFV GKLWNYIEGV IIEVLMHYSG
201: SCPELQYFIK RAVQNLIAKK KDKSVNGIRE IIGMGRLTDL TSSTEYVATY SSLMGQKKKF MKFCKYSKGG TKINIKGFGV IDVFFLRWQP KDVVQQAFEL
301: KMTMAAYWKI VFSPQKLGNH EIEVEIVDDR MATLHVRFFA YWQFAFSLEK FVYEIKDEVL GDLIASHGGG FESSLQESLV DEMCFRLKKS VKLLEELKEM
401: VAKIMEYSLG SSC

Best Arabidopsis Sequence Match ( AT1G60500.1 )
(BLAST)

001: MVKKKVATKK NSPSLAIAKK KSRSNKDVVS VEAPIISSYN DRIRPLLDTV DRLRNLNVMR EGIHLPTIVV VGDQSSGKSS VLESLAGISL PRGQGICTRV
101: PLVMRLQRSS SPEPEIWLEY NDKVVPTDEE HIAEAIRAAT DVIAGSGKGV SDAPLTLHVK KAGVPDLTMV DLPGITRVPV NGQPENIYEQ ISGMIMEYIE
201: PQESIILNVL SATVDFTTCE SIRMSRKVDK TGQRTLAVVT KADMAPEGLL QKVTADDVSI VLGYVCVRNR IGEETYEEAR MQEELLFRTH PVLSLIDEDI
301: VGIPVLAQKL MLIQSSMIAR CLPKIVSKIN QKLDTAVLEL NKLPMVMAST GEALMALMDI IGSAKESLLR ILVQGDFSEY PDDQNMHCTA RLADMLSQFS
401: DSLQAKPKEV AEFLMDEIKI LDECKCVGLP NFIPRSAFLA ILSQHVDGIQ DKPVEFINKI WDYIEDVLSS VTAKRSDNFP QIQSSIKRAG RNLISKIKEQ
501: SVNRVMEIVE MEKLTDYTCN PEYMTSWTQK TSAQESFIDA VVKNENIPDY FSVTGFGNVK ISHLRKYHAH LLIPAFDMKM RITSYWKIVL RRIVDNLALY
601: LQLSVKSLVN TRFQKEIVAE MVDPRDGGGV EKMLEESPLV ASKREKLQNS IKLLKESKDA VAAIVDQNC

Arabidopsis Description

DRP4CDynamin-related protein 4C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP55]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.