Factsheet for PGSC0003DMT400072601

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064491	Potato	cytosol	50.89	79.55
PGSC0003DMT400064542	Potato	cytosol	78.68	72.15
PGSC0003DMT400095128	Potato	cytosol	50.24	70.84
PGSC0003DMT400064541	Potato	cytosol	68.66	69.44
PGSC0003DMT400050652	Potato	cytosol	63.33	63.74
KRH11082	Soybean	cytosol	13.41	56.85
KRH21190	Soybean	cytosol	57.67	53.68
KRH42928	Soybean	cytosol	51.53	53.26
KRH21193	Soybean	cytosol	42.33	52.82
KRH59040	Soybean	cytosol	57.51	52.74
TraesCS4D01G217900.1	Wheat	cytosol	56.06	52.34
AT1G60530.1	Thale cress	cytosol	25.2	51.83
CDY47217	Canola	cytosol	42.97	51.75
CDY53047	Canola	cytosol	8.08	51.55
CDY47216	Canola	cytosol	44.75	51.49
CDY53048	Canola	cytosol	41.03	50.8
HORVU4Hr1G061820.3	Barley	plastid	55.57	50.59
EER95148	Sorghum	cytosol	55.25	50.52
TraesCS4B01G217700.1	Wheat	cytosol	51.86	50.31
Zm00001d028495_P001	Maize	cytosol	54.77	50.3
Os03t0260000-01	Rice	cytosol	55.09	50.3
Bra027151.1-P	Field mustard	cytosol	54.6	50.07
PGSC0003DMT400094747	Potato	cytosol	33.28	49.88
TraesCS4A01G086700.1	Wheat	cytosol	53.15	49.55
CDY53046	Canola	cytosol	53.63	49.26
KXG39737	Sorghum	cytosol	51.37	48.62
CDY24536	Canola	cytosol	51.05	48.32
CDY34120	Canola	cytosol	51.05	48.32
AT1G60500.1	Thale cress	mitochondrion	52.18	48.28
Bra031502.1-P	Field mustard	cytosol	50.89	48.17
Bra031505.1-P	Field mustard	cytosol	44.26	47.9
Os04t0129900-01	Rice	cytosol	52.02	47.08
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	42.33	47.04
TraesCS4D01G098800.1	Wheat	cytosol	51.37	46.49
CDY02039	Canola	cytosol, plastid	41.84	46.33
TraesCS4A01G213700.1	Wheat	cytosol	44.26	46.28
Zm00001d028497_P001	Maize	cytosol	45.72	45.35
CDY34117	Canola	cytosol	37.96	44.51
CDY03289	Canola	cytosol	37.96	44.51
PGSC0003DMT400065607	Potato	cytosol	14.22	42.93
CDY36456	Canola	cytosol	12.76	42.47
Bra010250.1-P	Field mustard	cytosol	26.49	41.52
CDY23281	Canola	cytosol	26.49	41.41
PGSC0003DMT400088564	Potato	cytosol	5.49	27.64
Bra031511.1-P	Field mustard	cytosol	24.72	24.76
CDY24530	Canola	cytosol, nucleus, plasma membrane	25.04	24.45
PGSC0003DMT400000646	Potato	cytosol	21.0	21.31
PGSC0003DMT400028286	Potato	cytosol	21.0	21.24
PGSC0003DMT400004319	Potato	cytosol	20.84	21.01
PGSC0003DMT400004655	Potato	cytosol	20.68	20.98
PGSC0003DMT400051417	Potato	cytosol	18.42	20.61
PGSC0003DMT400004228	Potato	cytosol	7.43	16.25
PGSC0003DMT400014025	Potato	cytosol	15.35	12.32
PGSC0003DMT400032399	Potato	plastid	15.19	11.39

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:IPR020850	UniProt:M1CQM6
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	EnsemblPlantsGene:PGSC0003DMG400028251	PGSC:PGSC0003DMG400028251
EnsemblPlants:PGSC0003DMT400072601	PRINTS:PR00195	PFscan:PS51388	PANTHER:PTHR11566	PANTHER:PTHR11566:SF135	SMART:SM00053
SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI000295F0A3	SEG:seg	:	:

Description

Interferon-induced GTP-binding protein mx [Source:PGSC_GENE;Acc:PGSC0003DMG400028251]

Coordinates

chr10:+:55873288..55875343

Molecular Weight (calculated)

69469.5 Da

IEP (calculated)

7.044

GRAVY (calculated)

-0.291

Length

619 amino acids

Sequence
(BLAST)

001: MKKTSTKSAQ QKTDNSSSKS HAVILDDDQK PNLADVAPAP PIVASVNDKI RPLLDCVDKL RHLNIMQEGI QLPTIVVVGD QSSGKSSVLE SLAGISLPKG
101: QGICTRVPLI MRLQNESKMC APNLHLEYNG KSIHVDELRV ADAIVNATDE IAGQATVDFP TCESIRMSQK VDKTGERTLA VVTKGDKAPE GLLEKVTADE
201: VNIGLGYVCV RNRIGNETYE EARKDEARLF STHPLLSKID KSMVGVPVLA QKLVRIQATI ISKCLPDIVR RINDKLAANV AELNRLPKHL SSVAEALTTF
301: MCILSTSKDS LKKILVRGEF DEYPDEKEMH CTARLVEMLD QYSKELDAKN FEKKEDFLME EIRALEETKG IGLPNFLPRG VFLNVLQKRV KEIATMPEHF
401: TGEVWNYIER IVIKVLMHHC DNYPQLQSST RRAAQNLIAK KKDESVDWVR EIIGMENQTD YTCNPEYVAN CSKIMAQQTA FMEIMNDHKK SSVINLAGGI
501: GVIDVGHLRK HVGVVQQAFE LKMRMIAYWK IVLMRLVDSM ALHIMFSIQN TINKQMEEEI VKDLMAPEGG GIERMLDESP LVAEKRNRLK KSIKLLNESK
601: EVVSNVMDRI SFHGDQERD

Best Arabidopsis Sequence Match ( AT1G60500.1 )
(BLAST)

001: MVKKKVATKK NSPSLAIAKK KSRSNKDVVS VEAPIISSYN DRIRPLLDTV DRLRNLNVMR EGIHLPTIVV VGDQSSGKSS VLESLAGISL PRGQGICTRV
101: PLVMRLQRSS SPEPEIWLEY NDKVVPTDEE HIAEAIRAAT DVIAGSGKGV SDAPLTLHVK KAGVPDLTMV DLPGITRVPV NGQPENIYEQ ISGMIMEYIE
201: PQESIILNVL SATVDFTTCE SIRMSRKVDK TGQRTLAVVT KADMAPEGLL QKVTADDVSI VLGYVCVRNR IGEETYEEAR MQEELLFRTH PVLSLIDEDI
301: VGIPVLAQKL MLIQSSMIAR CLPKIVSKIN QKLDTAVLEL NKLPMVMAST GEALMALMDI IGSAKESLLR ILVQGDFSEY PDDQNMHCTA RLADMLSQFS
401: DSLQAKPKEV AEFLMDEIKI LDECKCVGLP NFIPRSAFLA ILSQHVDGIQ DKPVEFINKI WDYIEDVLSS VTAKRSDNFP QIQSSIKRAG RNLISKIKEQ
501: SVNRVMEIVE MEKLTDYTCN PEYMTSWTQK TSAQESFIDA VVKNENIPDY FSVTGFGNVK ISHLRKYHAH LLIPAFDMKM RITSYWKIVL RRIVDNLALY
601: LQLSVKSLVN TRFQKEIVAE MVDPRDGGGV EKMLEESPLV ASKREKLQNS IKLLKESKDA VAAIVDQNC

Arabidopsis Description

DRP4CDynamin-related protein 4C [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP55]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.