Factsheet for PGSC0003DMT400065607

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088564	Potato	cytosol	33.17	55.28
PGSC0003DMT400050652	Potato	cytosol	63.41	21.14
PGSC0003DMT400064542	Potato	cytosol	60.49	18.37
GSMUA_Achr8P19650_001	Banana	cytosol, mitochondrion	49.76	18.31
KXG39737	Sorghum	cytosol	51.71	16.21
Os03t0260000-01	Rice	cytosol	52.68	15.93
TraesCS4A01G213700.1	Wheat	cytosol	45.85	15.88
TraesCS4D01G217900.1	Wheat	cytosol	50.73	15.69
HORVU4Hr1G061820.3	Barley	plastid	51.71	15.59
Zm00001d028495_P001	Maize	cytosol	50.73	15.43
EER95148	Sorghum	cytosol	50.24	15.21
TraesCS4B01G217700.1	Wheat	cytosol	46.83	15.05
Os04t0129900-01	Rice	cytosol	49.76	14.91
TraesCS4A01G086700.1	Wheat	cytosol	48.29	14.91
TraesCS4D01G098800.1	Wheat	cytosol	48.78	14.62
PGSC0003DMT400072601	Potato	cytosol	42.93	14.22
PGSC0003DMT400064541	Potato	cytosol	32.68	10.95
Zm00001d028497_P001	Maize	cytosol	30.73	10.1
PGSC0003DMT400004655	Potato	cytosol	28.29	9.51
PGSC0003DMT400000646	Potato	cytosol	28.29	9.51
PGSC0003DMT400004319	Potato	cytosol	28.29	9.45
PGSC0003DMT400051417	Potato	cytosol	24.88	9.22
PGSC0003DMT400028286	Potato	cytosol	27.32	9.15
PGSC0003DMT400032399	Potato	plastid	20.49	5.09
PGSC0003DMT400014025	Potato	cytosol	15.12	4.02
PGSC0003DMT400095128	Potato	cytosol	6.34	2.96
PGSC0003DMT400094747	Potato	cytosol	0.98	0.48
PGSC0003DMT400064491	Potato	cytosol	0.0	0.0
PGSC0003DMT400004228	Potato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:G_DYNAMIN_dom	InterPro:IPR030381	UniProt:M1CEB8	InterPro:P-loop_NTPase	PFAM:PF00350	EnsemblPlantsGene:PGSC0003DMG400025522
PGSC:PGSC0003DMG400025522	EnsemblPlants:PGSC0003DMT400065607	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51718	PANTHER:PTHR11566
PANTHER:PTHR11566:SF135	SMART:SM00053	SUPFAM:SSF52540	UniParc:UPI000296AAFB	SEG:seg	:

Description

Interferon-induced GTP-binding protein mx [Source:PGSC_GENE;Acc:PGSC0003DMG400025522]

Coordinates

chr11:+:42352865..42353482

Molecular Weight (calculated)

21972.4 Da

IEP (calculated)

4.981

GRAVY (calculated)

-0.042

Length

205 amino acids

Sequence
(BLAST)

001: MTSQQVSNDS SSSDPKHLGG VEPQGSVVHA PIVLSFNDMI QPLLDCVDKL RHLNSMQEDI KLPSIFKLGH LNIMQDGIQL PTIVVIGDQS SGKSGVLESL
101: AGISLPRGEG ICTRVPLIMK LQNHSETKVY VEYNGKSVPT DEFHVAEAII LATNEIAGHG KGISNFPLTL TASEKNGVPD LTMVDLLGIP TVPVHGNSTD
201: TFEQI

Best Arabidopsis Sequence Match ( AT1G60530.1 )
(BLAST)

001: MGGSKMSNDY EIDVEAGMSS LSIVNTPIEA PIVSSYNDRI RPLLDTVDRL RNLNVMREGI QLPTIVVVGD QSSGKSSVLE SLAGINLPRG QGICTRVPLV
101: MRLQRSSSPE PEIWLEYSDK VVPTDEEHVA EAICAATDVI AGTGEGVSDT PLTLSVKKNN VPDLTMVDLP GITRVPVNGQ PENIYEQISR MIMKYIEPQE
201: SIILNVLSAT VDFTTCESIR MSRQVDKTGE RTLAVVTKAD MAPEGLLQKV TADDVSIGLG YICVRNRIGE ETYEEARVQE DLLFRTHPLL SLIDGDIVGI
301: L

Arabidopsis Description

DRP4APutative dynamin-related protein 4A [Source:UniProtKB/Swiss-Prot;Acc:Q9ZP56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.