Factsheet for PGSC0003DMT400000646

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g095970.2.1	Tomato	plastid	98.85	98.85
VIT_15s0046g00470.t01	Wine grape	cytosol	86.39	85.83
GSMUA_Achr1P04880_001	Banana	cytosol	85.57	85.57
Os05t0556100-01	Rice	plasma membrane	85.25	85.39
EES19921	Sorghum	cytosol	85.25	85.39
KRH47905	Soybean	cytosol, endoplasmic reticulum	84.26	84.4
TraesCS1D01G393000.2	Wheat	cytosol	84.1	84.24
TraesCS1A01G385400.2	Wheat	cytosol, golgi, nucleus, unclear	84.1	84.24
TraesCS1B01G411700.3	Wheat	cytosol	83.77	83.91
Os01t0681100-01	Rice	cytosol, plasma membrane	24.92	82.61
CDY25074	Canola	cytosol	82.13	82.13
EES01270	Sorghum	cytosol	81.97	82.1
AT3G61760.1	Thale cress	cytosol	81.97	81.97
CDX67862	Canola	cytosol	81.97	81.97
Bra003469.1-P	Field mustard	cytosol	77.21	81.91
KRH06461	Soybean	cytosol	67.54	79.38
Zm00001d009504_P002	Maize	cytosol	84.43	78.51
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	84.92	77.31
HORVU1Hr1G084970.2	Barley	plasma membrane	83.77	75.59
PGSC0003DMT400004319	Potato	cytosol	72.13	71.66
PGSC0003DMT400028286	Potato	cytosol	69.34	69.12
PGSC0003DMT400004655	Potato	cytosol	68.85	68.85
PGSC0003DMT400051417	Potato	cytosol	58.52	64.56
PGSC0003DMT400004228	Potato	cytosol	28.69	61.84
TraesCS6B01G443600.1	Wheat	cytosol	41.31	48.18
TraesCS6D01G385300.1	Wheat	cytosol	36.56	45.05
PGSC0003DMT400088564	Potato	cytosol	6.07	30.08
PGSC0003DMT400065607	Potato	cytosol	9.51	28.29
PGSC0003DMT400064542	Potato	cytosol	25.25	22.81
PGSC0003DMT400050652	Potato	cytosol	21.97	21.79
PGSC0003DMT400095128	Potato	cytosol	15.41	21.41
PGSC0003DMT400072601	Potato	cytosol	21.31	21.0
PGSC0003DMT400064541	Potato	cytosol	20.33	20.26
PGSC0003DMT400064491	Potato	cytosol	10.33	15.91
PGSC0003DMT400014025	Potato	cytosol	19.84	15.69
PGSC0003DMT400032399	Potato	plastid	20.33	15.03
PGSC0003DMT400094747	Potato	cytosol	7.54	11.14

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:102580332	MapMan:22.1.7.1	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	UniProt:M0ZH30	InterPro:P-loop_NTPase	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	EnsemblPlantsGene:PGSC0003DMG400000227	PGSC:PGSC0003DMG400000227	EnsemblPlants:PGSC0003DMT400000646	PRINTS:PR00195
ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF60	SMART:SM00053
SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI0002968919	RefSeq:XP_006339704.1	SEG:seg	:

Description

Phragmoplastin [Source:PGSC_GENE;Acc:PGSC0003DMG400000227]

Coordinates

chr1:-:73498389..73507942

Molecular Weight (calculated)

68132.1 Da

IEP (calculated)

8.120

GRAVY (calculated)

-0.301

Length

610 amino acids

Sequence
(BLAST)

001: MENLIQLVNR LQRACTALGD HGEESALPTL WDALPSIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLHRLE QGSREYAEFG HLPRKKFTDF
101: AAVRKEIADE TDRETGRSKQ ISSVPIYLSI YSPNVVNLTL IDLPGLTKVA VEGQSDSIVA DIENMVRAYI EKPNCIILAV SPANQDLATS DAIKISREVD
201: PKGERTFGVL TKIDLMDKGT DAVDMLEGRA YKLQFPWIGV VNRSQADINK NVDMIAARRR EKEYFSSTPE YRHLASKMGS EHLGKVMSKH LEAVIKSRIP
301: GLQSLINKTI IDLESELSRL GKPIATDAGG KLYMVMEVCR TFDGIFKEHL DGVRPGGDKI YNVFDNQLPA ALKRLQFDKQ LSMDNVRKLI TEADGYQPHL
401: IAPEQGYRRL IESSLISIKG PAEAAVDAVH AILKDLVHKS ISETAELKQY PSLRVEVNGA AVESLERMRD ESKKATLQLV EMECSYLTVD FFRKLPQDIE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCASLRNSI PKSVVYCQVR EAKRSLLDHF FTDLGKKEGR QLGTLLDEDP AIMQRRLSLA KRLELYRAAQ
601: SEIDSVAWSK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.