Factsheet for HORVU1Hr1G084970.2

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

plasma membrane: 29385242

msms PMID: 29385242 doi

K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock

Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G084970.2
HORVU4Hr1G011180.2
HORVU4Hr1G073960.12
HORVU4Hr1G074040.2
HORVU5Hr1G077570.15
HORVU5Hr1G092990.14
HORVU6Hr1G028850.1
HORVU6Hr1G077000.1
HORVU7Hr1G040670.2
HORVU7Hr1G055220.21

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42080.1	HORVU4Hr1G011180.2	AT1G08560.1	19959995
AT5G42080.1	HORVU6Hr1G028850.1	AT1G08560.1	19959995
AT5G42080.1	HORVU4Hr1G073960.12	AT1G59610.1	20231465
AT5G42080.1	HORVU4Hr1G074040.2	AT1G59610.1	20231465
AT5G42080.1	HORVU5Hr1G092990.14	AT1G59610.1	20231465
AT5G42080.1	HORVU6Hr1G077000.1	AT1G59610.1	20231465
AT5G42080.1	HORVU7Hr1G040670.2	AT1G59610.1	20231465
AT5G42080.1	HORVU5Hr1G077570.15	AT5G13300.1	15923323
AT5G42080.1	HORVU7Hr1G055220.21	AT5G13300.1	15923323
AT5G42080.1	HORVU1Hr1G084970.2	AT5G42080.1	19144001
AT5G42080.1	HORVU1Hr1G084970.2	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G411700.3	Wheat	cytosol	89.79	99.67
TraesCS1D01G393000.2	Wheat	cytosol	89.5	99.34
TraesCS1A01G385400.2	Wheat	cytosol, golgi, nucleus, unclear	89.5	99.34
Os05t0556100-01	Rice	plasma membrane	85.65	95.07
EES19921	Sorghum	cytosol	83.88	93.1
GSMUA_Achr8P27540_001	Banana	cytosol	80.18	89.0
VIT_02s0025g01570.t01	Wine grape	cytosol, extracellular	78.85	87.52
GSMUA_Achr6P26600_001	Banana	cytosol	78.25	86.86
Zm00001d009504_P002	Maize	cytosol	83.58	86.13
Solyc05g050600.2.1	Tomato	nucleus, plastid	77.07	85.55
KRH60047	Soybean	endoplasmic reticulum	76.63	84.92
KRH41321	Soybean	endoplasmic reticulum, nucleus	76.33	84.59
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	83.58	84.33
KRH77654	Soybean	endoplasmic reticulum	75.74	83.93
Solyc01g095970.2.1	Tomato	plastid	75.59	83.77
PGSC0003DMT400000646	Potato	cytosol	75.59	83.77
Bra003469.1-P	Field mustard	cytosol	70.86	83.3
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	75.15	83.28
CDY25074	Canola	cytosol	75.15	83.28
CDX67862	Canola	cytosol	75.15	83.28
CDX67529	Canola	cytosol	75.15	83.28
KRH47905	Soybean	cytosol, endoplasmic reticulum	75.0	83.25
CDY13364	Canola	cytosol	75.0	83.11
Bra028525.1-P	Field mustard	cytosol	75.0	83.11
AT3G61760.1	Thale cress	cytosol	74.85	82.95
CDY27661	Canola	cytosol	74.7	82.79
Bra025448.1-P	Field mustard	cytosol	71.15	82.5
AT5G42080.1	Thale cress	cytosol	74.41	82.46
CDX99702	Canola	cytosol	74.26	82.3
KRH06461	Soybean	cytosol	59.91	78.03
HORVU4Hr1G007880.11	Barley	cytosol	60.06	63.94
HORVU1Hr1G054560.1	Barley	mitochondrion	60.06	59.01
HORVU6Hr1G058700.1	Barley	cytosol	4.29	27.1
HORVU3Hr1G094260.4	Barley	cytosol	32.54	26.99
HORVU2Hr1G068810.3	Barley	cytosol	31.51	26.76
HORVU4Hr1G061820.3	Barley	plastid	23.82	23.68
HORVU7Hr1G040670.2	Barley	cytosol, nucleus, plasma membrane	24.85	18.63
HORVU6Hr1G077000.1	Barley	cytosol, mitochondrion, nucleus	24.7	17.2
HORVU3Hr1G071340.9	Barley	cytosol, plastid	20.41	16.08
HORVU4Hr1G074040.2	Barley	nucleus	4.88	12.89
HORVU5Hr1G092990.14	Barley	cytosol	4.73	12.08
HORVU2Hr1G095510.1	Barley	cytosol	1.48	11.36
HORVU4Hr1G073960.12	Barley	cytosol	6.66	11.28
HORVU2Hr1G095500.1	Barley	cytosol	1.92	11.02
HORVU1Hr1G001520.1	Barley	cytosol	1.18	8.89

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	UniProt:A0A287GK67	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom
EnsemblPlantsGene:HORVU1Hr1G084970	EnsemblPlants:HORVU1Hr1G084970.2	InterPro:IPR020850	InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF138	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI000B464305
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:534656493..534663835

Molecular Weight (calculated)

75910.4 Da

IEP (calculated)

9.623

GRAVY (calculated)

-0.415

Length

676 amino acids

Sequence
(BLAST)

001: PLPLPSPNPN QLHAPPRRHQ TATTAAPARP TRAARLSSRR RLVSPSPPPR PRPRPRDPIR PDPAPAAMEN LISLVNKLQR ACTALGDHGE ESALPTLWDS
101: LPSIAVVGGQ SSGKSSVLES VVGKDFLPRG SGIVTRRPLV LQLHRIDGDR EYAEFMHVPR KRFTDFAMVR KEIADETDRQ TGHGKGISSV PIHLSIFSPY
201: VVNLTLIDLP GLTKVAVEGQ PESIVQEIEN MVRSFIEKPN CIILAVSPAN QDLATSDAIK ISREVDPKGE RTFGVLTKID LMDKGTDAVD ILEGRSYRLQ
301: FPWIGVVNRS QQDINKSVDM IAARRRERDY FANTPEYKHL AHRMGSEHLA KSLSKHLESV IKSRIPGLQS LITKTVAELE TELSRLGKPI ANDAGGKLYT
401: IMEICRMFDG IYKEHLDGVR PGGEKIYHVF DNQFPVAIKR LQFDKQLSME NVRKLITEAD GYQPHLIAPE QGYRRLIESC LVSIRGPAEA AVDTVHGILK
501: ELVHKAINET HELKQFPTLR VEVGNAAFES LERMRDESKK NTLKLVDMET SYLTVDFFRK LPQDVEKGGN PSHSIFDRYN DSYLRRIGTT VLAYVNMVSS
601: TLRNSIPKSI VYCQVREAKR SLLDHFFTEL GAREIRQLSK LLDEDPAVME RRTNLAKRLE LYRSAQAEID AVAWSK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.