CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01512
KRH08461
KRH14106
KRH27552
KRH27831
KRH36411
KRH41321
KRH45201
KRH60047
KRH70119
KRH74010
KRH77654

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42080.1	KRH08461	AT1G08560.1	19959995
AT5G42080.1	KRH70119	AT1G08560.1	19959995
AT5G42080.1	KRH27552	AT1G59610.1	20231465
AT5G42080.1	KRH36411	AT1G59610.1	20231465
AT5G42080.1	KRH01512	AT5G13300.1	15923323
AT5G42080.1	KRH45201	AT5G13300.1	15923323
AT5G42080.1	KRH14106	AT5G35750.1	18642946
AT5G42080.1	KRH74010	AT5G35750.1	18642946
AT5G42080.1	KRH27831	AT5G42080.1	19144001
AT5G42080.1	KRH41321	AT5G42080.1	19144001
AT5G42080.1	KRH60047	AT5G42080.1	19144001
AT5G42080.1	KRH77654	AT5G42080.1	19144001
AT5G42080.1	KRH27831	AT5G42080.1	20231465
AT5G42080.1	KRH41321	AT5G42080.1	20231465
AT5G42080.1	KRH60047	AT5G42080.1	20231465
AT5G42080.1	KRH77654	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41321	Soybean	endoplasmic reticulum, nucleus	99.02	99.02
KRH77654	Soybean	endoplasmic reticulum	93.44	93.44
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	92.79	92.79
Os05t0556100-01	Rice	plasma membrane	86.72	86.86
AT5G42080.1	Thale cress	cytosol	86.72	86.72
CDX67529	Canola	cytosol	86.72	86.72
CDY13364	Canola	cytosol	86.56	86.56
Bra028525.1-P	Field mustard	cytosol	86.56	86.56
CDY27661	Canola	cytosol	86.23	86.23
Bra025448.1-P	Field mustard	cytosol	82.3	86.11
EES19921	Sorghum	cytosol	85.9	86.04
GSMUA_Achr1P04880_001	Banana	cytosol	85.9	85.9
CDX99702	Canola	cytosol	85.74	85.74
TraesCS1D01G393000.2	Wheat	cytosol	85.25	85.39
TraesCS1A01G385400.2	Wheat	cytosol, golgi, nucleus, unclear	85.25	85.39
TraesCS1B01G411700.3	Wheat	cytosol	85.08	85.22
KRH47905	Soybean	cytosol, endoplasmic reticulum	83.28	83.42
EES01270	Sorghum	cytosol	83.11	83.25
Os01t0681100-01	Rice	cytosol, plasma membrane	24.75	82.07
Zm00001d009504_P002	Maize	cytosol	85.41	79.42
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	85.74	78.06
KRH06461	Soybean	cytosol	66.39	78.03
HORVU1Hr1G084970.2	Barley	plasma membrane	84.92	76.63
KRH48908	Soybean	cytosol, nucleus	68.69	67.8
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	68.36	67.69
KRH04285	Soybean	cytosol	67.38	67.16
KRH41722	Soybean	endoplasmic reticulum, nucleus	67.87	67.1
KRH60421	Soybean	endoplasmic reticulum	67.87	67.1
KRH66384	Soybean	cytosol, endoplasmic reticulum	67.7	66.83
KRH49665	Soybean	endoplasmic reticulum	67.54	66.67
KRH70357	Soybean	endoplasmic reticulum, nucleus	67.05	66.18
TraesCS6B01G443600.1	Wheat	cytosol	41.15	47.99
TraesCS6D01G385300.1	Wheat	cytosol	36.23	44.65
KRH10618	Soybean	plastid	36.23	26.85
KRH49844	Soybean	plastid	35.74	26.85
KRH21736	Soybean	nucleus	36.23	26.76
KRH42074	Soybean	endoplasmic reticulum, nucleus	35.57	26.66
KRH62781	Soybean	nucleus	35.41	26.44
KRH21193	Soybean	cytosol	20.66	25.4
KRH42928	Soybean	cytosol	23.77	24.21
KRH59040	Soybean	cytosol	26.23	23.7
KRH21190	Soybean	cytosol	24.92	22.86
KRH11082	Soybean	cytosol	5.41	22.6
KRH27552	Soybean	cytosol	28.52	18.87
KRH36411	Soybean	endoplasmic reticulum, nucleus	28.52	18.87
KRH51295	Soybean	endoplasmic reticulum	26.72	17.83
KRH01870	Soybean	endoplasmic reticulum	26.72	17.83
KRH55251	Soybean	plastid	23.11	17.74
KRH26094	Soybean	plastid	22.95	17.41
KRH42202	Soybean	nucleus	19.51	15.85
KRH58326	Soybean	plasma membrane	8.2	10.02

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	EMBL:ACUP02003347	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	EnsemblPlantsGene:GLYMA_05G217300	GO:GO:0000166
GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0007049	GO:GO:0008017	GO:GO:0008150	GO:GO:0009524	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0051301	InterPro:G_DYNAMIN_dom	UniProt:I1K693	InterPro:IPR020850
InterPro:IPR030381	EnsemblPlants:KRH60047	ProteinID:KRH60047	ProteinID:KRH60047.1	InterPro:P-loop_NTPase	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF58	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI00023C5140
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:39744360..39750943

Molecular Weight (calculated)

68371.6 Da

IEP (calculated)

8.133

GRAVY (calculated)

-0.288

Length

610 amino acids

Sequence
(BLAST)

001: MENLISLVNK IQRACTALGD HGENSALPTL WDSLPAIAVV GGQSSGKSSV LESVVGKDFL PRGSGIVTRR PLVLQLHKID EGSREYAEFL HLPRKRFTDF
101: VAVRKEIQDE TDRETGRTKQ ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VEGQPDSIVK DIEDMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PTGDRTIGVL TKIDLMDKGT DAVDILEGRA YRLKFPWIGV VNRSQQDINK NVDMIAARRR EREYFNSTPE YKHLANRMGS EHLAKMLSKH LETVIKSKIP
301: GIQSLINKTI AELEAELTRL GKPVAADAGG KLYAIMEICR SFDQIFKDHL DGVRPGGDKI YNVFDNQLPA ALKRLQFDKQ LSMENIRKLI TEADGYQPHL
401: IAPEQGYRRL IESSLITIRG PAEAAVDAVH SLLKDLVHKA MSETLDLKQY PGLRVEVGAA AVDSLERMRD ESKRATLQLV DMECGYLTVD FFRKLPQDVD
501: KGGNPTHSIF DRYNDSYLRR IGTTILSYVN MVCATLRHSI PKSIVYCQVR EAKRSLLDHF FTELGKMEIK RLSSLLNEDP AIMERRSALA KRLELYRSAQ
601: AEIDAVAWSK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.