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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH01870 Soybean endoplasmic reticulum 97.26 97.26
VIT_12s0035g01740.t01 Wine grape cytosol 82.82 82.28
KRH27552 Soybean cytosol 80.85 80.15
KRH36411 Soybean endoplasmic reticulum, nucleus 80.53 79.83
Solyc11g039650.1.1 Tomato cytosol, nucleus, plastid 79.54 79.11
GSMUA_Achr1P18350_001 Banana cytosol 76.7 78.41
GSMUA_Achr7P05530_001 Banana nucleus 78.99 78.39
GSMUA_Achr4P20040_001 Banana cytosol 77.79 77.37
Solyc01g103130.1.1 Tomato nucleus, unclear 50.44 75.95
GSMUA_Achr3P01090_001 Banana nucleus 75.71 75.38
VIT_03s0038g00540.t01 Wine grape cytosol 13.46 69.89
VIT_02s0087g00010.t01 Wine grape cytosol 14.11 69.35
Solyc01g103120.2.1 Tomato cytosol 21.77 67.46
VIT_03s0110g00120.t01 Wine grape cytosol 18.16 67.21
KRH46533 Soybean cytosol, endoplasmic reticulum, nucleus 20.57 30.52
KRH48908 Soybean cytosol, nucleus 19.91 29.45
KRH60421 Soybean endoplasmic reticulum 19.69 29.17
KRH41722 Soybean endoplasmic reticulum, nucleus 19.69 29.17
KRH66384 Soybean cytosol, endoplasmic reticulum 19.69 29.13
KRH70357 Soybean endoplasmic reticulum, nucleus 19.58 28.96
KRH49665 Soybean endoplasmic reticulum 19.47 28.8
KRH04285 Soybean cytosol 19.26 28.76
KRH47905 Soybean cytosol, endoplasmic reticulum 18.6 27.91
KRH60047 Soybean endoplasmic reticulum 17.83 26.72
KRH41321 Soybean endoplasmic reticulum, nucleus 17.72 26.56
KRH77654 Soybean endoplasmic reticulum 17.61 26.39
KRH27831 Soybean cytosol, endoplasmic reticulum, nucleus 17.4 26.07
KRH06461 Soybean cytosol 14.55 25.63
KRH49844 Soybean plastid 17.83 20.07
KRH42074 Soybean endoplasmic reticulum, nucleus 17.72 19.9
KRH10618 Soybean plastid 17.72 19.68
KRH21736 Soybean nucleus 17.61 19.49
KRH42928 Soybean cytosol 12.69 19.37
KRH62781 Soybean nucleus 16.74 18.73
KRH59040 Soybean cytosol 13.35 18.07
KRH21190 Soybean cytosol 12.47 17.14
KRH21193 Soybean cytosol 8.86 16.33
KRH42202 Soybean nucleus 12.47 15.18
KRH11082 Soybean cytosol 2.41 15.07
KRH55251 Soybean plastid 11.05 12.7
KRH26094 Soybean plastid 11.05 12.56
KRH58326 Soybean plasma membrane 5.69 10.42
Protein Annotations
Gene3D:1.20.120.1240EntrezGene:100809385Gene3D:2.30.29.30MapMan:22.1.7.2Gene3D:3.40.50.300EMBL:ACUP02004733
ncoils:CoilInterPro:Dynamin_GTPaseInterPro:Dynamin_GTPase_CSInterPro:Dynamin_SFInterPro:Dynamin_centralInterPro:GED
InterPro:GED_domEnsemblPlantsGene:GLYMA_07G273100GO:GO:0000166GO:GO:0000266GO:GO:0003674GO:GO:0003824
GO:GO:0003924GO:GO:0005488GO:GO:0005515GO:GO:0005525GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0008017GO:GO:0008150GO:GO:0009987GO:GO:0016043
GO:GO:0016787InterPro:G_DYNAMIN_domUniProt:I1KNS5InterPro:IPR001849InterPro:IPR011993InterPro:IPR020850
InterPro:IPR030381EnsemblPlants:KRH51295ProteinID:KRH51295ProteinID:KRH51295.1InterPro:P-loop_NTPasePFAM:PF00169
PFAM:PF00350PFAM:PF01031PFAM:PF02212InterPro:PH-like_dom_sfInterPro:PH_domainPRINTS:PR00195
ScanProsite:PS00410PFscan:PS50003PFscan:PS51388PFscan:PS51718PANTHER:PTHR11566PANTHER:PTHR11566:SF57
SMART:SM00053SMART:SM00233SMART:SM00302SUPFAM:SSF50729SUPFAM:SSF52540UniParc:UPI0002339215
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr7:-:44509016..44521710
Molecular Weight (calculated)
99567.9 Da
IEP (calculated)
9.519
GRAVY (calculated)
-0.532
Length
914 amino acids
Sequence
(BLAST)
001: MEAIEDLVQL SDSMRQAAAV LADEDVDNYK RPSTFLNVVA LGNVGAGKSA SLNSLIGHPV LPTGENGATR APISIELNRD TSLSSKSIIL QIDNKTQQVS
101: ASALRHSLQD RLSKGSSGRS RDEIYLKLRT STAPPLKLID LPGLDQRIVD DKMISEYVEH NDAILLLVVP AAQAPEISTS RALRVAKEYD AESTRTVGVI
201: SKIDQASSEP KALAAVQALL LNQGPPKTSD IPWVALIGQS VSIASAQSGS GASENSLETA WRAETESLKS ILTGAPQSKL GRIALVESLA GQIRNRMKLR
301: LPTLLTGLQG KSQIVQEELV KFGEQMVSSS EGTRALALQL CREFEDKFLQ HLTGGEGNGW KVVASFEGNF PNRIKQLPID RHFDINNVKR IVLEADGYQP
401: YLISPEKGLR SLIKGVLELA KEPSRLCVDE VHRVLVDLVS SSANATPGLG RYPPFKREIV AIASSALEAF KNESKKMVVA LVDMERAFVP PQHFIRLVQR
501: RMERQRREEE LKNRPSKKAL DAEQSILNRA TSPQTSQQSG GNLKSMKEKS SQQDKDTQEG SGLKTAGPEG EITAGYLLKK SGKGSGWSRR WFVLNEKTGK
601: LGYTKKQEER HFRGVITLEE CNIDEISDDD EASTKSSKDK KSNGPDSGKA SNLIFKITSK VPYKTVMKAQ SAVLLKAESM ADKVEWINKL RSVAQAKGGQ
701: AIGEPSFPMR QSLSDGSLDT MARKPADPEE ELRWMSQEVR GYVEAVLNSL AANVPKAVVL CQVEKAKEDM LNQLYSSISA QSSAKIEELL QEDHDVKNKR
801: ERVQKQSSLL SKLTRQLGVH DNRASAASNW SDKGSAAESS PGSSGPSSVD DWRSAFDSAA NGPSDLPSRY GSGGHSRRYS DPSQNGDVSS GSNSNSRRTP
901: TRLPPAPPHS GSRY
Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)
001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY
Arabidopsis Description
DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.