Factsheet for Solyc11g039650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g01740.t01	Wine grape	cytosol	81.28	81.2
Solyc01g103130.1.1	Tomato	nucleus, unclear	52.77	79.9
KRH51295	Soybean	endoplasmic reticulum	79.11	79.54
KRH01870	Soybean	endoplasmic reticulum	78.56	78.99
GSMUA_Achr7P05530_001	Banana	nucleus	77.8	77.63
GSMUA_Achr1P18350_001	Banana	cytosol	75.41	77.52
GSMUA_Achr4P20040_001	Banana	cytosol	76.71	76.71
GSMUA_Achr3P01090_001	Banana	nucleus	74.65	74.73
VIT_02s0087g00010.t01	Wine grape	cytosol	15.02	74.19
VIT_03s0038g00540.t01	Wine grape	cytosol	13.71	71.59
VIT_03s0110g00120.t01	Wine grape	cytosol	19.15	71.26
Solyc01g103120.2.1	Tomato	cytosol	22.52	70.17
Solyc01g088510.2.1	Tomato	nucleus	16.76	30.08
Solyc08g077360.2.1	Tomato	plastid	19.7	29.67
Solyc10g062160.1.1	Tomato	plastid	18.82	29.57
Solyc01g095970.2.1	Tomato	plastid	19.26	29.02
Solyc01g005310.2.1	Tomato	plastid	19.59	28.94
Solyc05g050600.2.1	Tomato	nucleus, plastid	18.82	28.41
Solyc11g043200.1.1	Tomato	cytosol, nucleus	5.11	20.52
Solyc01g106050.2.1	Tomato	plastid	17.3	19.34
Solyc11g043210.1.1	Tomato	nucleus	11.32	18.87
Solyc11g043170.1.1	Tomato	cytosol	3.26	18.4
Solyc08g006600.2.1	Tomato	plastid	14.25	17.35
Solyc04g072030.1.1	Tomato	cytosol	12.4	16.89
Solyc11g069980.1.1	Tomato	cytosol	11.86	13.64
Solyc10g047050.1.1	Tomato	nucleus	11.43	13.62
Solyc07g063080.2.1	Tomato	plastid	11.75	13.03
Solyc11g070010.1.1	Tomato	cytosol	4.24	9.92

Protein Annotations

Gene3D:1.20.120.1240	Gene3D:2.30.29.30	MapMan:22.1.7.2	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR001849
InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381	UniProt:K4D7U2	InterPro:P-loop_NTPase	PFAM:PF00169
PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00195
ScanProsite:PS00410	PFscan:PS50003	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF57
SMART:SM00053	SMART:SM00233	SMART:SM00302	SUPFAM:SSF50729	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g039650.1
EnsemblPlants:Solyc11g039650.1.1	UniParc:UPI0002769DF4	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:-:43307192..43333411

Molecular Weight (calculated)

99702.3 Da

IEP (calculated)

9.307

GRAVY (calculated)

-0.476

Length

919 amino acids

Sequence
(BLAST)

001: MEAIEELEQL SDSMKQAASL LADEDVDENS SSSSKRPSTF LNVVAIGGTG AGKSAVLNSL IGHPALPTGE GGATRAPICI DLKRDSSLSS KSIILQIDSK
101: SQPVSASALR HSLQDRLSKI SSKSRDEIYL KLRTSTAPPL KLVDLPGVDK SNLDDSMTQY VEHNDAILLV VISAAQAPEV ASCKAIRIAK EYDSECTRTV
201: GVISKIDQAA SEPKVLAAVQ ALLSNQGPRG TTDIPWVALI GQSVSIASAQ SGNVGSDNSL ETAWRAESES LKSILTGAPQ SKLGRLALIE TLAHQIRSRM
301: KVRLPNLLSG LQGKSQVVQD ELVRLGEQMV HSAEGTKALA LELCREFEDK FLLHITGGEG DGWKVVASFE GNFPNRIKQL PLDKHFDINN VKRIVLEADG
401: YQPYLISPEK GLRSLIKGVL EQAKEPSRLC VDEVHRVLVD IVSSAANATP GLGRYPPFKR EVVAIASDAL DGFKTDAKKM VVALVDMERA FVPPQHFIRL
501: VQRRMDRQRR EDELKNRGSK KAHEAEQSML NRATSPQTGS QQVGGNLKSM KEKPSQLDKD ASEGSALKTA GPEGEITAGF LLKKSAKTNG WSKRWFVLNE
601: KTGKLGYTKK QEERHFRGVI TLEECILEEV ADEEEAPAPT KSSKDKKANG PDVAKTPNLV FKITSRVPYK TVLKAHSAVV LKAESVADKT EWLNKLRIVI
701: SSKGGQVKGE SAPPIRQSLS DGSLETMTRR PADPEEELRW MAQEVRGYVE AVLNSLAANV PKAVVLCQVE KAKEDMLTKL YSSISAQSTA KIEELLQEDQ
801: NVKRRRERIQ KQSSLLSKLT RQLSIHDNRA AAAAIYANGE AESSPTASSP SSGDDWRSAF DAAANGSSSH SRYGSSGSSR RYNEPAENGD TNSRSSSASR
901: RTPNRLPPGP PASGSGYRS

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.