Factsheet for Solyc08g006600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g043200.1.1	Tomato	cytosol, nucleus	20.93	69.0
VIT_04s0008g07010.t01	Wine grape	cytosol	53.38	62.19
Solyc11g043170.1.1	Tomato	cytosol	12.45	57.67
Solyc01g106050.2.1	Tomato	plastid	58.01	53.28
Solyc11g043210.1.1	Tomato	nucleus	31.66	43.38
Solyc05g050600.2.1	Tomato	nucleus, plastid	28.61	35.47
Solyc10g062160.1.1	Tomato	plastid	26.75	34.53
Solyc01g095970.2.1	Tomato	plastid	27.68	34.26
Solyc08g077360.2.1	Tomato	plastid	27.28	33.77
Solyc01g005310.2.1	Tomato	plastid	27.02	32.8
Solyc01g088510.2.1	Tomato	nucleus	21.32	31.45
Solyc04g072030.1.1	Tomato	cytosol	21.19	23.7
Solyc11g069980.1.1	Tomato	cytosol	20.66	19.52
Solyc01g103130.1.1	Tomato	nucleus, unclear	13.64	16.97
Solyc10g047050.1.1	Tomato	nucleus	15.63	15.3
Solyc07g063080.2.1	Tomato	plastid	16.56	15.08
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	17.35	14.25
Solyc11g070010.1.1	Tomato	cytosol	5.43	10.43
Solyc01g103120.2.1	Tomato	cytosol	3.58	9.15

Protein Annotations

Gene3D:1.20.120.1240	MapMan:13.6.2.1	Gene3D:2.30.29.30	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR011993	InterPro:IPR020850	InterPro:IPR030381
UniProt:K4CIE8	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	InterPro:PH-like_dom_sf
PRINTS:PR00195	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF84	SMART:SM00053
SMART:SM00302	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc08g006600.2	EnsemblPlants:Solyc08g006600.2.1	UniParc:UPI000276C04D	SEG:seg

Description

No Description!

Coordinates

chr8:-:1188325..1206669

Molecular Weight (calculated)

84573.4 Da

IEP (calculated)

6.424

GRAVY (calculated)

-0.275

Length

755 amino acids

Sequence
(BLAST)

001: MGKNSKRSNS NSNSDVAQST HPSFFIGSSV IPIINKLQDI FSPLGDIDDR FTGLRLPQVA VIGSQSSGKS SVLEALVGRD FLPRGCDICT RRPLVLQLEK
101: RSAEIGNDSL EWGEFGHLSE KRFYDFSAIR REILAETEKE VGVNKGVSDK QIRLKICSPN VLNITLVDLP GITKVPVGDQ PSDIEARIRD MIMSYIKQET
201: SIILAVSPAN ADLANSDALQ MAKQVDPTGT RTIGVITKLD IMDKGTNARS FLLGKVIPLR LGYIGVVNRS QEDINNNRPI REALAYEEQF FRDYHVYRGL
301: SDRCGIPQLA KKLNQILEQH IRNVLPTLKT DLTSQLVAAE KELHAYGEAL ESKGERGAML LNILTKYSEA FSSEVDGKSQ AMTTKELSGG ARIHHIFQSI
401: FVKSLEEVDP CEDLSDEDIR IAIHNATGPR NALFVPEVPF EVLVRRQIAR LLDPSLQCLR FVYDELIKIS RACETVEMQR FSELRRRLED VTARFLRDDV
501: KPAERMITNL IDMEMDYINS SHPNFIGGTK AVDIAQNELK TMWADLNLTM IECHQQKPLN APPAHTLTDI KLRTSTTRTW GVTSLFGIRG SSVGNSSKRH
601: AAEVVHDITL APPVIQLKNP PLVLRPGETE TEYQVEIIVT KLLIASYYDI VRRNIQDLVP KAIMHYLVNH AKRNLLGTFI EKLYRENLYE DLLREHDDVV
701: IQRRTTAEMC NALRQAVETL DEFVADVSTL SSSDSMDALP NFSNLSSNSN SKSST

Best Arabidopsis Sequence Match ( AT4G33650.2 )
(BLAST)

001: MTIEEVSGET PPSTPPSSST PSPSSSTTNA APLGSSVIPI VNKLQDIFAQ LGSQSTIALP QVVVVGSQSS GKSSVLEALV GRDFLPRGND ICTRRPLVLQ
101: LLQTKSRANG GSDDEWGEFR HLPETRFYDF SEIRREIEAE TNRLVGENKG VADTQIRLKI SSPNVLNITL VDLPGITKVP VGDQPSDIEA RIRTMILSYI
201: KQDTCLILAV TPANTDLANS DALQIASIVD PDGHRTIGVI TKLDIMDKGT DARKLLLGNV VPLRLGYVGV VNRCQEDILL NRTVKEALLA EEKFFRSHPV
301: YHGLADRLGV PQLAKKLNQI LVQHIKVLLP DLKSRISNAL VATAKEHQSY GELTESRAGQ GALLLNFLSK YCEAYSSLLE GKSEEMSTSE LSGGARIHYI
401: FQSIFVKSLE EVDPCEDLTD DDIRTAIQNA TGPRSALFVP DVPFEVLVRR QISRLLDPSL QCARFIFEEL IKISHRCMMN ELQRFPVLRK RMDEVIGDFL
501: REGLEPSEAM IGDIIDMEMD YINTSHPNFI GGTKAVEAAM HQVKSSRIPH PVARPKQDTV EPDRTSSSTS QVKSRSFLGR QANGIVTDQG VVSADAEKAQ
601: PAANASDTRW GIPSIFRGGD TRAVTKDSLL NKPFSEAVED MSHNLSMIYL KEPPAVLRPT ETHSEQEAVE IQITKLLLRS YYDIVRKNIE DSVPKAIMHF
701: LVNHTKRELH NVFIKKLYRE NLFEEMLQEP DEIAVKRKRT QETLHVLQQA YRTLDELPLE ADSVSAGMSK HQELLTSSKY STSSSYSASP STTRRSRRAG
801: DQHQNGYGF

Arabidopsis Description

DRP3ANOXY15 [Source:UniProtKB/TrEMBL;Acc:A0A178UUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.