Factsheet for Solyc11g043200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106050.2.1	Tomato	plastid	79.48	22.14
KRH21736	Soybean	nucleus	78.6	21.79
KRH10618	Soybean	plastid	78.17	21.75
KRH49844	Soybean	plastid	76.86	21.67
KRH42074	Soybean	endoplasmic reticulum, nucleus	76.86	21.62
KRH62781	Soybean	nucleus	75.55	21.18
CDY46101	Canola	cytosol	73.8	21.05
AT2G14120.3	Thale cress	cytosol, plastid	74.24	21.01
Bra011458.1-P	Field mustard	cytosol	73.8	20.94
Solyc08g006600.2.1	Tomato	plastid	69.0	20.93
CDX68994	Canola	cytosol	74.24	20.91
GSMUA_Achr8P08760_001	Banana	cytosol	70.31	20.91
Bra036991.1-P	Field mustard	cytosol	73.36	20.82
GSMUA_Achr10P...	Banana	cytosol	71.18	20.82
TraesCS5D01G082000.4	Wheat	cytosol	61.57	20.58
OQU81360	Sorghum	cytosol	67.25	20.37
CDX75370	Canola	cytosol	74.24	20.24
CDX72418	Canola	cytosol	73.36	20.22
CDY28314	Canola	cytosol	70.74	20.1
CDY48440	Canola	cytosol	70.74	20.07
Bra034579.1-P	Field mustard	cytosol	70.74	20.07
TraesCS2D01G279900.2	Wheat	cytosol	67.69	19.97
TraesCS2B01G298400.1	Wheat	cytosol	67.69	19.87
TraesCS2A01G281000.2	Wheat	cytosol	67.25	19.87
AT4G33650.2	Thale cress	cytosol	69.43	19.65
TraesCS3A01G428000.2	Wheat	cytosol, plastid	68.12	19.5
HORVU2Hr1G068810.3	Barley	cytosol	67.69	19.47
Os01t0920400-01	Rice	nucleus, plastid	69.43	19.44
EES04116	Sorghum	cytosol	69.43	19.41
TraesCS3B01G465100.3	Wheat	cytosol, plastid	68.12	19.4
Zm00001d042338_P002	Maize	extracellular, mitochondrion	69.0	19.34
TraesCS3D01G423500.1	Wheat	cytosol	68.56	19.26
HORVU3Hr1G094260.4	Barley	cytosol	68.12	19.14
Os04t0381000-01	Rice	cytosol	67.69	19.09
Zm00001d012027_P002	Maize	cytosol	69.87	18.82
Solyc01g088510.2.1	Tomato	nucleus	36.24	16.21
Solyc05g050600.2.1	Tomato	nucleus, plastid	42.36	15.93
Solyc08g077360.2.1	Tomato	plastid	41.48	15.57
Solyc01g005310.2.1	Tomato	plastid	41.92	15.43
Solyc01g095970.2.1	Tomato	plastid	41.05	15.41
Solyc10g062160.1.1	Tomato	plastid	38.86	15.21
Zm00001d004012_P001	Maize	cytosol	66.81	13.99
Solyc11g043170.1.1	Tomato	cytosol	8.3	11.66
Solyc04g072030.1.1	Tomato	cytosol	30.13	10.22
Solyc11g069980.1.1	Tomato	cytosol	29.69	8.51
Solyc01g103130.1.1	Tomato	nucleus, unclear	20.09	7.58
Solyc10g047050.1.1	Tomato	nucleus	21.83	6.49
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	20.52	5.11
Solyc07g063080.2.1	Tomato	plastid	17.47	4.83
Solyc11g043210.1.1	Tomato	nucleus	6.11	2.54
Solyc11g070010.1.1	Tomato	cytosol	3.49	2.04
Solyc01g103120.2.1	Tomato	cytosol	0.87	0.68

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF	InterPro:Dynamin_central	GO:GO:0000166
GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR030381
UniProt:K4D887	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PRINTS:PR00195	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF84	SMART:SM00053	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g043200.1	EnsemblPlants:Solyc11g043200.1.1
UniParc:UPI000276A2BA	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:33338153..33343544

Molecular Weight (calculated)

25605.2 Da

IEP (calculated)

8.904

GRAVY (calculated)

-0.179

Length

229 amino acids

Sequence
(BLAST)

001: MLLVWMEIQR GSCGIWERLV GLLLLAETER EAGANKGVSD KQIRLKIFSP NVLDITLVDL PGITKVPVGD QPSDIEARIR TMIMSYIKRP SCLILAVTPA
101: NADLANSDAL QIAGNADPDG YRTIGVITKL DIMDRGTDAR NFLLGKVIPL RLGYIGVVNR SQEDIKMNRS IKDALIAEEN FFRSRPVYSE LADRCGVPQL
201: AKKLNQKYKR NSWAQEWRVC ARGHESEPL

Best Arabidopsis Sequence Match ( AT2G14120.1 )
(BLAST)

001: MSVDDLPPSS ASAVTPLGSS VIPIVNKLQD IFAQLGSQST IALPQVAVVG SQSSGKSSVL EALVGRDFLP RGNDICTRRP LRLQLVQTKP SSDGGSDEEW
101: GEFLHHDPVR RIYDFSEIRR EIEAETNRVS GENKGVSDIP IGLKIFSPNV LDISLVDLPG ITKVPVGDQP SDIEARIRTM ILTYIKEPSC LILAVSPANT
201: DLANSDALQI AGNADPDGHR TIGVITKLDI MDRGTDARNH LLGKTIPLRL GYVGVVNRSQ EDILMNRSIK DALVAEEKFF RSRPVYSGLT DRLGVPQLAK
301: KLNQVLVQHI KALLPSLKSR INNALFATAK EYESYGDITE SRGGQGALLL SFITKYCEAY SSTLEGKSKE MSTSELSGGA RILYIFQSVF VKSLEEVDPC
401: EDLTADDIRT AIQNATGPRS ALFVPDVPFE VLVRRQISRL LDPSLQCARF IFDELVKISH QCMMKELQRF PVLQKRMDEV IGNFLREGLE PSQAMIRDLI
501: EMEMDYINTS HPNFIGGTKA VEQAMQTVKS SRIPHPVARP RDTVEPERTA SSGSQIKTRS FLGRQANGII TDQAVPTAAD AERPAPAGST SWSGFSSIFR
601: GSDGQAAAKN NLLNKPFSET TQEVYQNLST IYLKEPPTIL KSSETHSEQE SVEIEITKLL LKSYYDIVRK NVEDLVPKAI MHFLVNYTKR ELHNVFIEKL
701: YRENLIEELL KEPDELAIKR KRTQETLRIL QQANRTLDEL PLEAESVERG YKIGSEAKHE ELPGTRRSRT ETNGNGRLHM

Arabidopsis Description

DRP3BDynamin related protein [Source:UniProtKB/TrEMBL;Acc:F4IFG2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.