Factsheet for Solyc01g095970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000646	Potato	cytosol	98.85	98.85
Solyc05g050600.2.1	Tomato	nucleus, plastid	93.28	93.43
GSMUA_Achr1P04880_001	Banana	cytosol	86.07	86.07
VIT_15s0046g00470.t01	Wine grape	cytosol	86.56	85.99
Os05t0556100-01	Rice	plasma membrane	85.25	85.39
EES19921	Sorghum	cytosol	85.08	85.22
TraesCS1D01G393000.2	Wheat	cytosol	84.1	84.24
KRH47905	Soybean	cytosol, endoplasmic reticulum	84.1	84.24
TraesCS1A01G385400.2	Wheat	cytosol, golgi, nucleus, unclear	84.1	84.24
TraesCS1B01G411700.3	Wheat	cytosol	83.77	83.91
Os01t0681100-01	Rice	cytosol, plasma membrane	24.92	82.61
CDY25074	Canola	cytosol	82.46	82.46
EES01270	Sorghum	cytosol	82.3	82.43
AT3G61760.1	Thale cress	cytosol	82.3	82.3
CDX67862	Canola	cytosol	82.3	82.3
Bra003469.1-P	Field mustard	cytosol	77.54	82.26
KRH06461	Soybean	cytosol	67.38	79.19
Zm00001d009504_P002	Maize	cytosol	84.26	78.35
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	84.75	77.16
HORVU1Hr1G084970.2	Barley	plasma membrane	83.77	75.59
Solyc01g088510.2.1	Tomato	nucleus	58.85	70.12
Solyc08g077360.2.1	Tomato	plastid	68.85	68.85
Solyc10g062160.1.1	Tomato	plastid	65.25	68.03
Solyc01g005310.2.1	Tomato	plastid	68.2	66.88
TraesCS6B01G443600.1	Wheat	cytosol	41.31	48.18
TraesCS6D01G385300.1	Wheat	cytosol	36.89	45.45
Solyc11g043200.1.1	Tomato	cytosol, nucleus	15.41	41.05
Solyc11g043170.1.1	Tomato	cytosol	10.82	40.49
Solyc08g006600.2.1	Tomato	plastid	34.26	27.68
Solyc01g106050.2.1	Tomato	plastid	36.23	26.89
Solyc01g103130.1.1	Tomato	nucleus, unclear	23.28	23.39
Solyc04g072030.1.1	Tomato	cytosol	25.41	22.96
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	29.02	19.26
Solyc11g069980.1.1	Tomato	cytosol	23.61	18.02
Solyc10g047050.1.1	Tomato	nucleus	20.0	15.82
Solyc11g043210.1.1	Tomato	nucleus	13.44	14.88
Solyc07g063080.2.1	Tomato	plastid	20.0	14.72
Solyc11g070010.1.1	Tomato	cytosol	7.7	11.96
Solyc01g103120.2.1	Tomato	cytosol	4.92	10.17

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381
UniProt:K4AZY6	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195
ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF60	SMART:SM00053
SMART:SM00302	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc01g095970.2	EnsemblPlants:Solyc01g095970.2.1	UniParc:UPI00027676B9	SEG:seg

Description

No Description!

Coordinates

chr1:-:87082207..87090852

Molecular Weight (calculated)

68213.2 Da

IEP (calculated)

8.120

GRAVY (calculated)

-0.306

Length

610 amino acids

Sequence
(BLAST)

001: MENLIQLVNR LQRACTALGD HGEESALPTL WDALPSIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLHRLE QGSREYAEFG HLPRKKFTDF
101: AAVRKEIADE TDRETGRSKQ ISSVPIYLSI YSPNVVNLTL IDLPGLTKVA VEGQSDSIVA DIENMVRAYI EKPNCIILAV SPANQDLATS DAIKISREVD
201: PKGERTFGVL TKIDLMDKGT DAVDILEGRA YKLQFPWIGV VNRSQADINK NVDMIAARRR EKEYFSSTPE YRHLTNRMGS EHLGKVMSKH LEAVIKSRIP
301: GLQSLINKTI IDLESELSRL GKPIATDAGG KLYMVMEVCR TFDGIFKEHL DGVRPGGDKI YNVFDNQLPA ALKRLQFDKQ LSMDNVRKLI TEADGYQPHL
401: IAPEQGYRRL IESSLISIKG PAEAAVDAVH AILKDLVHKS ISETSELKQY PSLRVEVNGA AIESLERMRD ESKKATLQLV EMECSYLTVD FFRKLPQDIE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCASLRNSI PKSVVYCQVR EAKRSLLDHF FTDLGKKEGR QLGTLLDEDP AIMQRRLSLA KRLELYRAAQ
601: SEIDSVAWAK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.