Factsheet for Solyc10g047050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014025	Potato	cytosol	98.96	98.96
VIT_12s0055g00490.t01	Wine grape	cytosol	84.44	84.22
KRH42202	Soybean	nucleus	80.29	82.42
CDY33414	Canola	cytosol	77.17	76.58
AT3G19720.1	Thale cress	cytosol	77.04	76.45
GSMUA_Achr10P...	Banana	cytosol	67.19	76.29
Bra038229.1-P	Field mustard	cytosol	77.17	75.7
CDY42203	Canola	cytosol	77.17	75.7
KRH58326	Soybean	plasma membrane	44.23	68.34
Solyc11g043200.1.1	Tomato	cytosol, nucleus	6.49	21.83
Solyc11g043170.1.1	Tomato	cytosol	4.54	21.47
Solyc01g005310.2.1	Tomato	plastid	16.34	20.26
Solyc05g050600.2.1	Tomato	nucleus, plastid	15.95	20.2
Solyc01g095970.2.1	Tomato	plastid	15.82	20.0
Solyc08g077360.2.1	Tomato	plastid	15.56	19.67
Solyc10g062160.1.1	Tomato	plastid	14.92	19.66
Solyc01g088510.2.1	Tomato	nucleus	12.97	19.53
Solyc01g106050.2.1	Tomato	plastid	18.16	17.03
Solyc04g072030.1.1	Tomato	cytosol	13.88	15.85
Solyc08g006600.2.1	Tomato	plastid	15.3	15.63
Solyc07g063080.2.1	Tomato	plastid	15.69	14.6
Solyc01g103130.1.1	Tomato	nucleus, unclear	10.77	13.67
Solyc11g043210.1.1	Tomato	nucleus	9.47	13.25
Solyc11g069980.1.1	Tomato	cytosol	13.49	13.02
Solyc11g070010.1.1	Tomato	cytosol	6.1	11.96
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	13.62	11.43
Solyc01g103120.2.1	Tomato	cytosol	2.46	6.44

Protein Annotations

MapMan:13.6.1.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_SF	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0007623
GO:GO:0008017	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009707	GO:GO:0009987
GO:GO:0010020	GO:GO:0016020	GO:GO:0016043	GO:GO:0016559	GO:GO:0016787	GO:GO:0042802
InterPro:G_DYNAMIN_dom	InterPro:IPR030381	UniProt:K4CZX0	InterPro:P-loop_NTPase	PFAM:PF00350	PRINTS:PR00195
PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF78	SMART:SM00053	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g047050.1
EnsemblPlants:Solyc10g047050.1.1	UniParc:UPI0002769BC8	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:+:39247320..39266379

Molecular Weight (calculated)

86740.4 Da

IEP (calculated)

6.310

GRAVY (calculated)

-0.346

Length

771 amino acids

Sequence
(BLAST)

001: MAGEESSPDS ATKNIDELEG QWRLYEAYNE LHGLAQEFDT PFDAPAVLVV GHQTDGKSAL VEALMGFQFN HVGGGTKTRR PITLHMKYNP ECDTPLCHLL
101: SDSDPSVSHE KSLQDIQAYI EAENMRLEKE TCQFSAKEII IRIEYKYCPN LTIIDTPGLV APAPSRKNRA LQAQARAVES LVRAKMQHRE FIILCLEDCN
201: DWSNATTRRV VMQIDPELSR TVVVATKLDT KIPQFARASD VEVFLSPPAS TLDGFMLGDS PFFTSVPSGR VGFGPESVFR SNDEFKQAIS SREVEDLVAL
301: EEKLGRVLSK QERSRIGVNS LRLFLEELLL KRYMDSVPSI IPLLEKEYRS STRKLSELDQ QLSSLNEAKL KEKGRTFHDL FLTKLSLLLK GTVIAPPDKF
401: GETLQDERVN GGAFIGSDGL QFPHKLIPNA GMRLYGGAQY HRAMAEFRFV VGGIKCPPIT REEIVNACGV EDIHDGTNYS RTACVIAVAK ARDTFEPFLH
501: QLGCRLSHIL KRLLPIAVYL LQKEGEYLSG HDVFLRRVAD AFNNFAESSE KSCREKCMED LVSTTRYVTW SLHNKNRAGL RQFLDSFGGS EQSAIIGNAT
601: STVFSQDSAT ASVASDNKQD VKPRTDVKLS HLASGNDSNM STQTTETRLA DLLDSTLWNR RLAPSSERIV YALVQQIFHG IREYFLASTE LKFNCFLLMP
701: VVDKLPAMLR EDLESAFEDN LDNVFDITNL RHSVAQDKRQ TEIELKRVQK LKEKFRYIHE QLNSQQAMFG Q

Best Arabidopsis Sequence Match ( AT3G19720.1 )
(BLAST)

001: MAEVSAKSVT VEEMAEEDDA AIEERWSLYE AYNELHALAQ ELETPFEAPA VLVVGQQTDG KSALVEALMG FQFNHVGGGT KTRRPITLHM KYDPQCQFPL
101: CHLGSDDDPS VSLPKSLSQI QAYIEAENMR LEQEPCSPFS AKEIIVKVQY KYCPNLTIID TPGLIAPAPG LKNRALQVQA RAVEALVRAK MQHKEFIILC
201: LEDSSDWSIA TTRRIVMQVD PELSRTIVVS TKLDTKIPQF SCSSDVEVFL SPPASALDSS LLGDSPFFTS VPSGRVGYGQ DSVYKSNDEF KQAVSLREME
301: DIASLEKKLG RLLTKQEKSR IGISKLRLFL EELLWKRYKE SVPLIIPLLG KEYRSTVRKL DTVSKELSSL DEAKLKERGR TFHDLFLTKL SLLLKGTVVA
401: PPDKFGETLQ DERTQGGAFV GTDGLQFSHK LIPNAGMRLY GGAQYHRAMA EFRFLVGAIK CPPITREEIV NACGVEDIHD GTNYSRTACV IAVAKARETF
501: EPFLHQLGAR LLHILKRLLP ISVYLLQKEG EYLSGHEVFL KRVASAFNSF VESTEKSCRD KCMEDLASTT RYVTWSLHNK NRAGLRQFLD SFGGTEHNTT
601: SGNAIGFSLP QDALGGTTDT KSRSDVKLSH LASNIDSGSS IQTTEMRLAD LLDSTLWNRK LAPSSERIVY ALVQQIFQGI REYFLASAEL KFNCFLLMPI
701: VDKLPALLRE ELENAFEDDL DSIFDITNLR QSLDQKKRST EIELRRIKRI KEKFRVMNEK LNSHEFAQNL KAPSVQH

Arabidopsis Description

ARC5Dynamin-like protein ARC5 [Source:UniProtKB/Swiss-Prot;Acc:Q84N64]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.