Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
nucleus: 25464976 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004228 | Potato | cytosol | 50.0 | 90.46 |
| PGSC0003DMT400004319 | Potato | cytosol | 99.02 | 82.57 |
| Zm00001d030005_P002 | Maize | cytosol, mitochondrion | 62.3 | 79.35 |
| VIT_15s0021g00480.t01 | Wine grape | cytosol | 88.09 | 72.86 |
| Solyc10g062160.1.1 | Tomato | plastid | 81.84 | 71.62 |
| GSMUA_Achr11P... | Banana | cytosol | 85.35 | 71.17 |
| GSMUA_Achr2P18210_001 | Banana | cytosol | 84.57 | 70.87 |
| KRH46533 | Soybean | cytosol, endoplasmic reticulum, nucleus | 84.77 | 70.45 |
| KRH48908 | Soybean | cytosol, nucleus | 84.18 | 69.74 |
| KRH66384 | Soybean | cytosol, endoplasmic reticulum | 83.01 | 68.77 |
| AT3G60190.1 | Thale cress | cytosol | 83.59 | 68.59 |
| Os10t0567800-01 | Rice | plasma membrane | 82.62 | 68.45 |
| Bra014507.1-P | Field mustard | cytosol | 83.59 | 68.37 |
| CDX89053 | Canola | cytosol | 83.59 | 68.37 |
| CDY42672 | Canola | cytosol | 83.2 | 68.16 |
| CDY41188 | Canola | cytosol | 83.2 | 68.16 |
| CDX71832 | Canola | cytosol | 83.01 | 68.0 |
| Bra007513.1-P | Field mustard | cytosol | 83.01 | 68.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 83.01 | 67.57 |
| KXG38886 | Sorghum | cytosol | 82.03 | 66.67 |
| Solyc08g077360.2.1 | Tomato | plastid | 78.91 | 66.23 |
| TraesCS1D01G216700.2 | Wheat | cytosol | 80.27 | 65.76 |
| TraesCS1B01G227700.1 | Wheat | cytosol | 80.08 | 65.6 |
| TraesCS1A01G213900.2 | Wheat | cytosol | 79.88 | 65.44 |
| EER98546 | Sorghum | cytosol | 78.12 | 64.1 |
| Solyc01g005310.2.1 | Tomato | plastid | 77.34 | 63.67 |
| Os09t0572900-01 | Rice | cytosol, plasma membrane | 77.73 | 63.58 |
| Zm00001d005306_P002 | Maize | cytosol, extracellular, mitochondrion | 77.93 | 63.53 |
| AT2G44590.3 | Thale cress | cytosol | 75.2 | 62.91 |
| CDY23444 | Canola | cytosol | 75.2 | 62.3 |
| CDY30477 | Canola | cytosol | 74.8 | 61.97 |
| Bra037643.1-P | Field mustard | cytosol | 74.41 | 61.65 |
| HORVU1Hr1G054560.1 | Barley | mitochondrion | 79.49 | 59.16 |
| Solyc01g095970.2.1 | Tomato | plastid | 70.12 | 58.85 |
| Solyc05g050600.2.1 | Tomato | nucleus, plastid | 69.73 | 58.62 |
| Solyc11g043200.1.1 | Tomato | cytosol, nucleus | 16.21 | 36.24 |
| Solyc08g006600.2.1 | Tomato | plastid | 31.45 | 21.32 |
| Solyc01g106050.2.1 | Tomato | plastid | 32.42 | 20.19 |
| Solyc01g103130.1.1 | Tomato | nucleus, unclear | 23.44 | 19.77 |
| Solyc04g072030.1.1 | Tomato | cytosol | 24.02 | 18.22 |
| Solyc11g039650.1.1 | Tomato | cytosol, nucleus, plastid | 30.08 | 16.76 |
| Solyc11g043210.1.1 | Tomato | nucleus | 14.84 | 13.79 |
| Solyc11g069980.1.1 | Tomato | cytosol | 20.7 | 13.27 |
| Solyc10g047050.1.1 | Tomato | nucleus | 19.53 | 12.97 |
| Solyc11g070010.1.1 | Tomato | cytosol | 8.4 | 10.94 |
| Solyc07g063080.2.1 | Tomato | plastid | 17.38 | 10.74 |
| Solyc01g103120.2.1 | Tomato | cytosol | 6.05 | 10.51 |
| Solyc11g043170.1.1 | Tomato | cytosol | 2.15 | 6.75 |
Protein Annotations
| Gene3D:1.20.120.1240 | MapMan:22.1.7.1 | Gene3D:3.40.50.300 | InterPro:Dynamin_GTPase | InterPro:Dynamin_SF | InterPro:Dynamin_central |
| InterPro:GED | InterPro:GED_dom | GO:GO:0000166 | GO:GO:0000266 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | InterPro:G_DYNAMIN_dom | InterPro:IPR020850 | InterPro:IPR030381 | UniProt:K4AYP1 | InterPro:P-loop_NTPase |
| PFAM:PF00350 | PFAM:PF01031 | PFAM:PF02212 | PRINTS:PR00195 | PFscan:PS51388 | PFscan:PS51718 |
| PANTHER:PTHR11566 | PANTHER:PTHR11566:SF77 | SMART:SM00053 | SMART:SM00302 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc01g088510.2 |
| EnsemblPlants:Solyc01g088510.2.1 | UniParc:UPI000276195D | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:83284590..83288845
Molecular Weight (calculated)
57583.3 Da
IEP (calculated)
7.904
GRAVY (calculated)
-0.342
Length
512 amino acids
Sequence
(BLAST)
(BLAST)
001: MVRKEIADET DRITGKTKQI SPVPIHLSIY SPNVVNLTLI DLPGLTKVAV EGQSETIVED IENMVRTYVG KPNCIILAVS PANQDIATSD AIKLAREVDP
101: TGERTFGVLT KLDLMDKGTN ALDVLEGRAY RLQHPWVGIV NRSQADINKN VDMIYARRKE REYFATSPDY GHLASKMGSE YLAKLLSKHL EQFIKARIPS
201: ITSLINKSID ELESELDHLG RPIAVDAGAQ LYTILELCRA FDKIFKEHLD GGRPGGDRIY GVFDNQLPAA LRKLPFDRYL SVQNVRKVVS EADGYQPHLI
301: APEQGYRRLI EGALNYFRGP AEASVDAVHF VLKELVRKSI GECQELKRFP SLQSTIAAAS NEALEKFRDE GRKTVVRLVD MESSYLTVDF FRKLPQEMET
401: PKGGKPEAAA AVDRYGEAHF RRIGSNVSSY VNMVSDTLRN TLPKAVVYCQ VKEAKQSLLN YFYTQIGKKE GKALSELLDE DPALMERRML CAKRLELYKK
501: ARDEIDSVAW VR
101: TGERTFGVLT KLDLMDKGTN ALDVLEGRAY RLQHPWVGIV NRSQADINKN VDMIYARRKE REYFATSPDY GHLASKMGSE YLAKLLSKHL EQFIKARIPS
201: ITSLINKSID ELESELDHLG RPIAVDAGAQ LYTILELCRA FDKIFKEHLD GGRPGGDRIY GVFDNQLPAA LRKLPFDRYL SVQNVRKVVS EADGYQPHLI
301: APEQGYRRLI EGALNYFRGP AEASVDAVHF VLKELVRKSI GECQELKRFP SLQSTIAAAS NEALEKFRDE GRKTVVRLVD MESSYLTVDF FRKLPQEMET
401: PKGGKPEAAA AVDRYGEAHF RRIGSNVSSY VNMVSDTLRN TLPKAVVYCQ VKEAKQSLLN YFYTQIGKKE GKALSELLDE DPALMERRML CAKRLELYKK
501: ARDEIDSVAW VR
001: MATMKSLIGL INKIQRACTV LGDHGGEGMS LWEALPTVAV VGGQSSGKSS VLESVVGRDF LPRGSGIVTR RPLVLQLHKT EDGTTEYAEF LHAPKKRFAD
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK
101: FAAVRKEIED ETDRITGKSK QISNIPIQLS IYSPNVVNLT LIDLPGLTKV AVDGQPESIV QDIENMVRSY VEKPNCIILA ISPANQDIAT SDAIKLAREV
201: DPTGERTFGV ATKLDIMDKG TDCLDVLEGR SYRLQHPWVG IVNRSQADIN KRVDMIAARR KEQEYFETSP EYGHLASRMG SEYLAKLLSQ HLETVIRQKI
301: PSIVALINKS IDEINAELDR IGRPIAVDSG AQLYTILELC RAFDRVFKEH LDGGRPGGDR IYGVFDHQLP AALKKLPFDR HLSTKNVQKV VSEADGYQPH
401: LIAPEQGYRR LIDGSISYFK GPAEATVDAV HFVLKELVRK SISETEELKR FPTLASDIAA AANEALERFR DESRKTVLRL VDMESSYLTV EFFRKLHLEP
501: EKEKPNPRNA PAPNADPYSD NHFRKIGSNV SAYINMVCDT LRNSLPKAVV YCQVREAKRS LLNFFYAQVG RKEKEKLGAM LDEDPQLMER RGTLAKRLEL
601: YKQARDDIDA VAWK
Arabidopsis Description
DRP1CDRP1C [Source:UniProtKB/TrEMBL;Acc:A0A178W4V6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.