Factsheet for Zm00001d005306_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER98546	Sorghum	cytosol	94.43	95.03
Os09t0572900-01	Rice	cytosol, plasma membrane	86.31	86.58
PGSC0003DMT400004319	Potato	cytosol	76.75	78.5
Solyc01g088510.2.1	Tomato	nucleus	63.53	77.93
VIT_15s0021g00480.t01	Wine grape	cytosol	75.8	76.9
GSMUA_AchrUn_...	Banana	cytosol	76.91	76.79
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	75.0	76.46
KRH66384	Soybean	cytosol, endoplasmic reticulum	74.84	76.05
KRH48908	Soybean	cytosol, nucleus	74.84	76.05
Zm00001d013426_P002	Maize	plasma membrane	73.57	75.61
Zm00001d033751_P003	Maize	plasma membrane	73.09	75.12
PGSC0003DMT400028286	Potato	cytosol	72.61	74.51
AT3G60190.1	Thale cress	cytosol	73.73	74.2
Solyc10g062160.1.1	Tomato	plastid	69.11	74.19
CDY41188	Canola	cytosol	73.09	73.44
CDX71832	Canola	cytosol	73.09	73.44
Bra014507.1-P	Field mustard	cytosol	73.09	73.32
CDX89053	Canola	cytosol	73.09	73.32
Bra007513.1-P	Field mustard	cytosol	72.93	73.28
CDY42672	Canola	cytosol	72.61	72.96
Zm00001d030005_P002	Maize	cytosol, mitochondrion	46.66	72.89
CDY23444	Canola	cytosol	68.31	69.42
CDY30477	Canola	cytosol	68.15	69.26
AT2G44590.3	Thale cress	cytosol	67.2	68.95
Bra037643.1-P	Field mustard	cytosol	67.83	68.93
PGSC0003DMT400004228	Potato	cytosol	31.05	68.9
Zm00001d009504_P002	Maize	cytosol	64.33	61.59
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	63.69	59.7
Zm00001d042338_P002	Maize	extracellular, mitochondrion	33.76	25.95
Zm00001d012027_P002	Maize	cytosol	34.08	25.18
Zm00001d028495_P001	Maize	cytosol	24.52	22.85
Zm00001d028497_P001	Maize	cytosol	20.06	20.19
Zm00001d037279_P005	Maize	plasma membrane	27.55	18.95
Zm00001d044757_P006	Maize	cytosol, nucleus, plasma membrane	27.23	18.73
Zm00001d017979_P002	Maize	extracellular, mitochondrion	27.23	18.57
Zm00001d004012_P001	Maize	cytosol	30.25	17.37
Zm00001d032256_P001	Maize	cytosol	25.32	17.1
Zm00001d043451_P001	Maize	plastid	20.22	15.43
Zm00001d023583_P005	Maize	plastid	18.15	15.04
Zm00001d012752_P006	Maize	plastid	18.95	14.18
Zm00001d051815_P002	Maize	cytosol	10.03	11.48

Protein Annotations

Gene3D:1.20.120.1240	EntrezGene:100382468	MapMan:22.1.7.1	Gene3D:3.40.50.300	UniProt:A0A1D6ELQ4	InterPro:Dynamin_GTPase
InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	ProteinID:ONM20812.1	InterPro:P-loop_NTPase	PFAM:PF00350
PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF73	SMART:SM00053	SMART:SM00302	SUPFAM:SSF52540	UniParc:UPI000221CF9C
EnsemblPlantsGene:Zm00001d005306	EnsemblPlants:Zm00001d005306_P002	EnsemblPlants:Zm00001d005306_T002	SEG:seg	:	:

Description

Dynamin-related protein 1E

Coordinates

chr2:-:168880537..168884895

Molecular Weight (calculated)

69520.2 Da

IEP (calculated)

6.760

GRAVY (calculated)

-0.346

Length

628 amino acids

Sequence
(BLAST)

001: MASMESLIGM MNRIQRACTA LGDHGGGSDL PTLWESLPTI AVVGGQSSGK SSVLESIVGT DFLPRGSGIV TRRPLVLQLQ QTEDGSQEYA EFLHMPKRRF
101: SDFALVRQEI ADETDRLTGK TKQISPVPIH LSIYSPKVVN LTMIDLPGLT KVAVEGQSES IVQDIENMVR SYVDKPNCII LAISPANQDI ATSDAIKLSK
201: EVDPTGERTF GVLTKLDLMD KGTNALDVLE GRAYRLQNPW VGIVNRSQAD INRKVDMISA REKEREYFET SPDYAHLSSR MGSGYLAKLL SQHLESVIKA
301: HIPSITATIN KTIDELESEL DIIGRAVAAD PGAQLYTILD LCRAFDRVFK EHLDGGRSGG DRIYGVFDHK LPAAFKKLSF DRYLSVQNVK KVVSEADGYQ
401: PHLMAPEQGY RRLIEKGINY FRGPAEATVD AVHVVLKDLV RKSIGETEQL RRFPTLQAAI ATAANEALER FREDGRSTAL RLVDMEAAYV TVEFFRKLPQ
501: DPPADAPASK AGGKPSAEPA AAPPPDRYGD GHFRSIASNV SQYIRMVGDE LLQKIPKAAV HCQVREAKRS LLNHFYVQMG KKEAGEFGHM LDEDPAMMER
601: RQQCFKRLEL YKSARDEVDS VAWGGSSR

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.