Factsheet for Solyc10g062160.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028286	Potato	cytosol	94.53	90.36
Solyc01g088510.2.1	Tomato	nucleus	71.62	81.84
VIT_15s0021g00480.t01	Wine grape	cytosol	84.1	79.48
GSMUA_Achr2P18210_001	Banana	cytosol	82.56	79.05
GSMUA_Achr11P...	Banana	cytosol	82.56	78.66
KRH46533	Soybean	cytosol, endoplasmic reticulum, nucleus	81.37	77.27
KRH48908	Soybean	cytosol, nucleus	81.37	77.02
KRH66384	Soybean	cytosol, endoplasmic reticulum	80.34	76.05
GSMUA_AchrUn_...	Banana	cytosol	81.2	75.52
Os10t0567800-01	Rice	plasma membrane	79.32	75.08
AT3G60190.1	Thale cress	cytosol	78.97	74.04
CDX89053	Canola	cytosol	78.63	73.48
Bra014507.1-P	Field mustard	cytosol	78.63	73.48
CDY42672	Canola	cytosol	78.46	73.44
CDY41188	Canola	cytosol	78.46	73.44
CDX71832	Canola	cytosol	78.29	73.28
Bra007513.1-P	Field mustard	cytosol	78.29	73.28
KXG38886	Sorghum	cytosol	78.8	73.17
TraesCS1D01G216700.2	Wheat	cytosol	76.92	72.0
TraesCS1A01G213900.2	Wheat	cytosol	76.75	71.84
TraesCS1B01G227700.1	Wheat	cytosol	76.75	71.84
Solyc08g077360.2.1	Tomato	plastid	74.36	71.31
Zm00001d030005_P002	Maize	cytosol, mitochondrion	48.89	71.14
Os09t0572900-01	Rice	cytosol, plasma membrane	75.38	70.45
EER98546	Sorghum	cytosol	74.53	69.87
CDY23444	Canola	cytosol	73.68	69.74
CDY30477	Canola	cytosol	73.68	69.74
Solyc01g005310.2.1	Tomato	plastid	74.02	69.61
Bra037643.1-P	Field mustard	cytosol	73.33	69.42
Zm00001d005306_P002	Maize	cytosol, extracellular, mitochondrion	74.19	69.11
AT2G44590.3	Thale cress	cytosol	71.62	68.46
Solyc05g050600.2.1	Tomato	nucleus, plastid	68.72	66.01
Solyc01g095970.2.1	Tomato	plastid	68.03	65.25
HORVU1Hr1G054560.1	Barley	mitochondrion	76.58	65.12
Solyc11g043170.1.1	Tomato	cytosol	11.28	40.49
Solyc11g043200.1.1	Tomato	cytosol, nucleus	15.21	38.86
Solyc08g006600.2.1	Tomato	plastid	34.53	26.75
Solyc01g106050.2.1	Tomato	plastid	36.41	25.91
Solyc01g103130.1.1	Tomato	nucleus, unclear	24.79	23.89
Solyc04g072030.1.1	Tomato	cytosol	25.13	21.78
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	29.57	18.82
Solyc11g069980.1.1	Tomato	cytosol	22.91	16.77
Solyc10g047050.1.1	Tomato	nucleus	19.66	14.92
Solyc11g043210.1.1	Tomato	nucleus	12.99	13.79
Solyc07g063080.2.1	Tomato	plastid	18.97	13.39
Solyc11g070010.1.1	Tomato	cytosol	5.98	8.91
Solyc01g103120.2.1	Tomato	cytosol	3.42	6.78

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	UniProt:K4D1K6
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF77	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g062160.1	EnsemblPlants:Solyc10g062160.1.1	UniParc:UPI000276976A	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:24919043..24926095

Molecular Weight (calculated)

65881.9 Da

IEP (calculated)

7.060

GRAVY (calculated)

-0.313

Length

585 amino acids

Sequence
(BLAST)

001: MESLIGLVNR IQMACTSLGD YGATNNSFYS LWDQLPSVAV VGGQSSGKSS VLESIVGRDF LPRGSGIVTR RPLVLQLHKT DEGQKEYAEF GHLPRTPFTD
101: FSLVRKEIQD ETDRITGKTR QISPVPIHLS IYSPNVVNLT LIDLPGLTKV AVEEQPESVV RDIEDMVRSY VEKPDCIILA ISPANQDIAT SDAIKLSREV
201: DSTGERTFGV LTKLDLMDKG TNALDVLEGR AYRLQQPWVG IVNRSQADIN KNVDMIYARR KEREYFASSP DYGHLASKMG SEYLAKLLSK HLESVIRAKI
301: PGIMSVINKS IDELESEMDH LGRPISDDAG AQLYTILELC RAFDKIFKEH LDGGRPGGDR IYGVFDNQLP AALRKLPFDR YLPIQNVRKI VSEADGYQPH
401: LIAPEQGYRR LIEGALNYFR GPAEASVDAV HFVLKELVRK SVGECQELKR FPSLQSAIAA ASYEALEKYR EEGRKTVLRL VDMEANYLTV EFFRKLPQEV
501: EKGGNPAATP AVDRYAEGHF RRIGLNVSSY INMVTDTLRN SIPKAVVYCQ VKEAKQSLLN YFYTQIGKKE VVFWEIFRVR TWQNY

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.