Factsheet for Solyc01g103130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	79.9	52.77
KRH01870	Soybean	endoplasmic reticulum	76.28	50.66
VIT_12s0035g01740.t01	Wine grape	cytosol	76.77	50.65
KRH51295	Soybean	endoplasmic reticulum	75.95	50.44
GSMUA_Achr1P18350_001	Banana	cytosol	73.64	50.0
GSMUA_Achr7P05530_001	Banana	nucleus	74.46	49.08
GSMUA_Achr4P20040_001	Banana	cytosol	73.31	48.42
GSMUA_Achr3P01090_001	Banana	nucleus	71.17	47.06
Solyc10g062160.1.1	Tomato	plastid	23.89	24.79
Solyc01g005310.2.1	Tomato	plastid	24.22	23.63
Solyc08g077360.2.1	Tomato	plastid	23.72	23.61
Solyc01g088510.2.1	Tomato	nucleus	19.77	23.44
Solyc01g095970.2.1	Tomato	plastid	23.39	23.28
Solyc05g050600.2.1	Tomato	nucleus, plastid	22.73	22.66
Solyc11g043200.1.1	Tomato	cytosol, nucleus	7.58	20.09
Solyc11g043170.1.1	Tomato	cytosol	4.78	17.79
Solyc01g106050.2.1	Tomato	plastid	19.11	14.11
Solyc08g006600.2.1	Tomato	plastid	16.97	13.64
Solyc04g072030.1.1	Tomato	cytosol	14.99	13.48
Solyc11g069980.1.1	Tomato	cytosol	14.33	10.89
Solyc10g047050.1.1	Tomato	nucleus	13.67	10.77
Solyc11g043210.1.1	Tomato	nucleus	9.72	10.71
Solyc07g063080.2.1	Tomato	plastid	14.33	10.49
Solyc11g070010.1.1	Tomato	cytosol	4.45	6.87
VIT_03s0110g00120.t01	Wine grape	cytosol	1.32	3.24
VIT_02s0087g00010.t01	Wine grape	cytosol	0.82	2.69
Solyc01g103120.2.1	Tomato	cytosol	0.99	2.03
VIT_03s0038g00540.t01	Wine grape	cytosol	0.16	0.57

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.2	Gene3D:3.40.50.300	ncoils:Coil	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SF	InterPro:Dynamin_central	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR001849	InterPro:IPR030381	UniProt:K4B1N9	InterPro:P-loop_NTPase
PFAM:PF00350	PFAM:PF01031	InterPro:PH_domain	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS50003
PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF57	SMART:SM00053	SUPFAM:SSF50729	SUPFAM:SSF52540
EnsemblPlantsGene:Solyc01g103130.1	EnsemblPlants:Solyc01g103130.1.1	UniParc:UPI0002768217	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:91785995..91794145

Molecular Weight (calculated)

65806.1 Da

IEP (calculated)

9.462

GRAVY (calculated)

-0.298

Length

607 amino acids

Sequence
(BLAST)

001: MEAIEELEQL GDAMRQAAAL LADEDVNEAA ASNKRPSTFL NVVALGNTGA GKSAVLNSLL GHPALPTGEG GATRAPICIE LKKDSSLNSK SIILQIDSKS
101: QQVSASALRH SLQDRLSKIS NKSRDEIYLK LRTSTAPPLK LVDLPGVDKG HIDDALSTYV ARSDAILLVV IPAALAPEIS SYKALRLVKE HDGECTRTIG
201: IISKVDQAAS DPKVLAAIHA LLLNQGPPST SDIPWVALIG QSVSIASAQS GNVGNDNSLE TAWRAESESL KSILTKAPQS KLGRVALVEV LAQQIRNRMK
301: VRLPNLLSGL QGKSQSVKDE LVKFGDQMVN SGEGTKALAL ELCREFEDKF LEHLTTGEGG GWKVIASFEG KFPDRIKQLP MDRHFELKNV KRVVLEADGY
401: QPYLISPEKG LRSLIKTVLE LAKEPSTLCV EEVHRVLVDI VSKAANSTPG LGKYPPFKQE VIAIATTALD GFRTEAKNMV IALVDMERVY VPPQHFIRLV
501: QRRMDRQRRD DGLKNQSSKK AAQAEQSMLT RATSSQAGDE KSSSKSGKDK SAQQDKDSQE GPVLKTAGPD GEITAGFLLK KSDKKSGWSK RWFVLNDKTG
601: KVCILAF

Best Arabidopsis Sequence Match ( AT1G59610.1 )
(BLAST)

001: MEAIDELSQL SDSMRQAASL LADEDPDETS SSRRPATSLN VVALGNVGAG KSAVLNSLIG HPVLPTGENG ATRAPIIIDL SREESLSSKA IILQIDNKNQ
101: QVSASALRHS LQDRLSKGAS GRGRDEIYLK LRTSTAPPLK LIDLPGLDQR IVDDSMIGEH AQHNDAILLV VVPASQASEI SSSRALKIAK EYDPESTRTV
201: GIISKIDQAA ENPKSLAAVQ ALLSNQGPPK TTDIPWVALI GQSVSIASAQ SGGSENSLET AWRAESESLK SILTGAPQSK LGRIALVDTL ASQIRSRMKL
301: RLPNILTGLQ GKSQIVQDEL ARLGEQLVSS AEGTRAIALE LCREFEDKFL LHLAGGEGSG WKVVASFEGN FPNRIKKLPL DRHFDLNNVK RIVLEADGYQ
401: PYLISPEKGL RSLIKTVLEL AKDPARLCVD EVHRVLVDIV SASANATPGL GRYPPFKREV VAIASAALDG FKNEAKKMVV ALVDMERAFV PPQHFIRLVQ
501: RRMERQRREE ELKGRSSKKG QDAEQSLLNR ATSPQPDGPS STGGSLKSLR DKLMPQDKDK DKEKETPEVS GLKTAGPEGE ITAGYLMKKS AKTNGWSRRW
601: FVLNEKTGKL GYTKKQEERN FRGTVTLEEC SIEEISDDEG EKSKSSKDKK SNGPDSKGPG LVFKITCRVP YKTVLKAHNA LVLKAESMVD KNEWINKLQK
701: VIQARGGQVG SASMRQSLSE GSLDKMVRKP VDPEEELRWM SQEVRGYVEA VLNSLAANVP KAVVLCQVEK SKEDMLNQLY SSISAIGNER IESLIQEDQN
801: VKRRRDRYQK QSSLLSKLTR QLSIHDNRAA AASSWSDNSG TESSPRTNGG SSGEDWMNAF NAAASGPDSL KRYGSGGHSR RYSDPAQNGE DSSGSGGSSR
901: RTTPNRLPPA PPQSGSSYRY

Arabidopsis Description

DRP2BDynamin-2B [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ55]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.