Factsheet for Solyc11g043170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106050.2.1	Tomato	plastid	69.94	13.87
Solyc08g006600.2.1	Tomato	plastid	57.67	12.45
Solyc10g062160.1.1	Tomato	plastid	40.49	11.28
Solyc05g050600.2.1	Tomato	nucleus, plastid	41.72	11.17
Solyc01g095970.2.1	Tomato	plastid	40.49	10.82
Solyc01g005310.2.1	Tomato	plastid	41.1	10.77
Solyc08g077360.2.1	Tomato	plastid	38.04	10.16
Solyc11g043200.1.1	Tomato	cytosol, nucleus	11.66	8.3
Solyc04g072030.1.1	Tomato	cytosol	31.29	7.56
Solyc11g069980.1.1	Tomato	cytosol	31.29	6.38
Solyc01g103130.1.1	Tomato	nucleus, unclear	17.79	4.78
Solyc07g063080.2.1	Tomato	plastid	23.31	4.58
Solyc10g047050.1.1	Tomato	nucleus	21.47	4.54
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	18.4	3.26
Solyc11g043210.1.1	Tomato	nucleus	10.43	3.09
Solyc01g088510.2.1	Tomato	nucleus	6.75	2.15
Solyc11g070010.1.1	Tomato	cytosol	1.84	0.76
Solyc01g103120.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF	GO:GO:0000166
GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017
GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR030381
UniProt:K4D884	InterPro:P-loop_NTPase	PFAM:PF00350	PRINTS:PR00195	ScanProsite:PS00410	PFscan:PS51718
PANTHER:PTHR11566	PANTHER:PTHR11566:SF21	SMART:SM00053	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc11g043170.1	EnsemblPlants:Solyc11g043170.1.1
UniParc:UPI000276A2B7	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr11:-:33353048..33353701

Molecular Weight (calculated)

18159.8 Da

IEP (calculated)

7.512

GRAVY (calculated)

-0.125

Length

163 amino acids

Sequence
(BLAST)

001: MAEDSVPVPV PVPSSTNTAP LGHSVIPIVN KLQDIFAQLG SQSTIELPQV AVVGSQSSGK SSVLEALVGR DFLPRGSDIC TRRPLVLQLI QNKRKPDGTE
101: DEYGEFLHLS GKRFYDFNEI RREIQIKPMT PNVSYIVFEN SKKINGLGFS VLVYDSRFFF QFL

Best Arabidopsis Sequence Match ( AT2G14120.1 )
(BLAST)

001: MSVDDLPPSS ASAVTPLGSS VIPIVNKLQD IFAQLGSQST IALPQVAVVG SQSSGKSSVL EALVGRDFLP RGNDICTRRP LRLQLVQTKP SSDGGSDEEW
101: GEFLHHDPVR RIYDFSEIRR EIEAETNRVS GENKGVSDIP IGLKIFSPNV LDISLVDLPG ITKVPVGDQP SDIEARIRTM ILTYIKEPSC LILAVSPANT
201: DLANSDALQI AGNADPDGHR TIGVITKLDI MDRGTDARNH LLGKTIPLRL GYVGVVNRSQ EDILMNRSIK DALVAEEKFF RSRPVYSGLT DRLGVPQLAK
301: KLNQVLVQHI KALLPSLKSR INNALFATAK EYESYGDITE SRGGQGALLL SFITKYCEAY SSTLEGKSKE MSTSELSGGA RILYIFQSVF VKSLEEVDPC
401: EDLTADDIRT AIQNATGPRS ALFVPDVPFE VLVRRQISRL LDPSLQCARF IFDELVKISH QCMMKELQRF PVLQKRMDEV IGNFLREGLE PSQAMIRDLI
501: EMEMDYINTS HPNFIGGTKA VEQAMQTVKS SRIPHPVARP RDTVEPERTA SSGSQIKTRS FLGRQANGII TDQAVPTAAD AERPAPAGST SWSGFSSIFR
601: GSDGQAAAKN NLLNKPFSET TQEVYQNLST IYLKEPPTIL KSSETHSEQE SVEIEITKLL LKSYYDIVRK NVEDLVPKAI MHFLVNYTKR ELHNVFIEKL
701: YRENLIEELL KEPDELAIKR KRTQETLRIL QQANRTLDEL PLEAESVERG YKIGSEAKHE ELPGTRRSRT ETNGNGRLHM

Arabidopsis Description

DRP3BDynamin related protein [Source:UniProtKB/TrEMBL;Acc:F4IFG2]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.