Factsheet for Solyc08g077360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004655	Potato	cytosol	98.2	98.2
Solyc01g088510.2.1	Tomato	nucleus	66.23	78.91
KRH04285	Soybean	cytosol	75.25	75.0
Solyc10g062160.1.1	Tomato	plastid	71.31	74.36
Solyc05g050600.2.1	Tomato	nucleus, plastid	69.67	69.79
Solyc01g005310.2.1	Tomato	plastid	71.15	69.77
Solyc01g095970.2.1	Tomato	plastid	68.85	68.85
Solyc11g043200.1.1	Tomato	cytosol, nucleus	15.57	41.48
Solyc11g043170.1.1	Tomato	cytosol	10.16	38.04
Solyc08g006600.2.1	Tomato	plastid	33.77	27.28
Solyc01g106050.2.1	Tomato	plastid	36.39	27.01
Solyc01g103130.1.1	Tomato	nucleus, unclear	23.61	23.72
Solyc04g072030.1.1	Tomato	cytosol	26.23	23.7
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	29.67	19.7
Solyc11g069980.1.1	Tomato	cytosol	24.26	18.52
Solyc11g043210.1.1	Tomato	nucleus	14.26	15.79
Solyc10g047050.1.1	Tomato	nucleus	19.67	15.56
Solyc07g063080.2.1	Tomato	plastid	19.34	14.23
Solyc11g070010.1.1	Tomato	cytosol	7.7	11.96
Solyc01g103120.2.1	Tomato	cytosol	5.25	10.85

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0000266	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008017	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850	InterPro:IPR030381	UniProt:K4CN96
InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195	ScanProsite:PS00410
PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF77	SMART:SM00053	SMART:SM00302
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc08g077360.2	EnsemblPlants:Solyc08g077360.2.1	UniParc:UPI000276C2B0	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:61239875..61246355

Molecular Weight (calculated)

68270.3 Da

IEP (calculated)

8.121

GRAVY (calculated)

-0.285

Length

610 amino acids

Sequence
(BLAST)

001: MEGVIGLVNK IQRACTLLGD YGDDRTLPTL WDALPTIVVL GGQSSGKSSV LESIVSRDFL PRGSGIVTRR PLVLQLYKIE PGQQDYAQFL HTGNKKFLDF
101: AMVRSEIQQE TDRVTGKTKQ ISPLPINLSI YSPNVVNLTL VDLPGLTKVA VEGQPESIVQ EIEDMVRAYV EKPNCILLAI TPANQDVATS DAIKIAREVD
201: PAGERTIGVL TKLDLMDKGT NALDVLEGRS YRLQHPWVGL VNRSQADINK NVDMVVARRK EREFFATSPD YGHLANRMGS EYLAKLLSKH LESVIKARVP
301: AILSLINSSI DELEAEMNYL GRPVAIDASA QLYSILELCR AFDRIFKEHL EGGRPGGDRI YGVFDHQLPA ALRKLPLDHH LAMQNVRKVV SEADGYQPHL
401: IAPEQGYRRL IDGALNYFRG PAEASVDAVH FILKELVKKS IGETQELRRY PTLQAEIASA AIEALERFRS DSKKTVLRMV EMESSYLTVD FFRKLPQDAD
501: KGGSPISSSA DRYTEGHLRR IGSNISSYVG MVSDTLRNTI PKAVVYCQVR EAKRCLLDHF YTQLGKKEGH RLSQLLDEDP VLMERRQKCS RRLELYKSAR
601: AEIDSTLWGK

Best Arabidopsis Sequence Match ( AT3G60190.1 )
(BLAST)

001: MTTMESLIGL VNRIQRACTV LGDYGGGTGS NAFNSLWEAL PTVAVVGGQS SGKSSVLESI VGRDFLPRGS GIVTRRPLVL QLHKTDDGTE EYAEFLHLPK
101: KQFTDFALVR REIQDETDRI TGKNKQISPV PIHLSIYSPN VVNLTLIDLP GLTKVAVEGQ PETIAEDIES MVRTYVDKPN CIILAISPAN QDIATSDAIK
201: LAKDVDPTGE RTFGVLTKLD LMDKGTNALE VLEGRSYRLQ HPWVGIVNRS QADINKNVDM MLARRKEREY FDTSPDYGHL ASKMGSEYLA KLLSKHLESV
301: IRTRIPSILS LINKSIEELE RELDRMGRPV AVDAGAQLYT ILEMCRAFDK IFKEHLDGGR PGGDRIYGVF DNQLPAALKK LPFDRHLSLQ SVKKIVSEAD
401: GYQPHLIAPE QGYRRLIEGA LGYFRGPAEA SVDAVHYVLK ELVRKSISET EELKRFPSLQ VELAAAANSS LEKFREESKK SVIRLVDMES AYLTAEFFRK
501: LPQEIERPVT NSKNQTASPS SATLDQYGDG HFRRIASNVS AYVNMVSDTL RNTIPKACVY CQVRQAKLAL LNYFYSQISK REGKQLGQLL DEDPALMDRR
601: LECAKRLELY KKARDEIDAV AWVR

Arabidopsis Description

DRP1EDynamin-related protein 1E [Source:UniProtKB/Swiss-Prot;Acc:Q9FNX5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.