Factsheet for Solyc11g043210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g106050.2.1	Tomato	plastid	83.67	56.08
VIT_03s0038g00970.t01	Wine grape	cytosol	79.49	52.46
GSMUA_Achr8P08760_001	Banana	cytosol	66.79	47.79
Os01t0920400-01	Rice	nucleus, plastid	63.16	42.54
Zm00001d042338_P002	Maize	extracellular, mitochondrion	62.43	42.11
EES04116	Sorghum	cytosol	62.43	42.0
TraesCS3A01G428000.2	Wheat	cytosol, plastid	60.8	41.88
TraesCS3B01G465100.3	Wheat	cytosol, plastid	60.8	41.67
GSMUA_Achr10P...	Banana	cytosol	58.62	41.25
HORVU3Hr1G094260.4	Barley	cytosol	60.8	41.1
TraesCS3D01G423500.1	Wheat	cytosol	60.62	40.98
Zm00001d012027_P002	Maize	cytosol	62.25	40.35
Os04t0381000-01	Rice	cytosol	54.81	37.19
TraesCS2A01G281000.2	Wheat	cytosol	51.91	36.9
TraesCS2D01G279900.2	Wheat	cytosol	51.72	36.73
TraesCS2B01G298400.1	Wheat	cytosol	51.91	36.67
OQU81360	Sorghum	cytosol	49.55	36.11
HORVU2Hr1G068810.3	Barley	cytosol	51.54	35.68
TraesCS5D01G082000.4	Wheat	cytosol	43.19	34.74
Solyc08g006600.2.1	Tomato	plastid	43.38	31.66
Zm00001d004012_P001	Maize	cytosol	41.74	21.02
Solyc01g088510.2.1	Tomato	nucleus	13.79	14.84
Solyc05g050600.2.1	Tomato	nucleus, plastid	15.79	14.29
Solyc08g077360.2.1	Tomato	plastid	15.79	14.26
Solyc01g103120.2.1	Tomato	cytosol	7.44	13.9
Solyc01g095970.2.1	Tomato	plastid	14.88	13.44
Solyc10g062160.1.1	Tomato	plastid	13.79	12.99
Solyc01g005310.2.1	Tomato	plastid	14.34	12.7
Solyc11g070010.1.1	Tomato	cytosol	8.35	11.7
Solyc11g039650.1.1	Tomato	cytosol, nucleus, plastid	18.87	11.32
Solyc11g043170.1.1	Tomato	cytosol	3.09	10.43
Solyc04g072030.1.1	Tomato	cytosol	12.7	10.37
Solyc01g103130.1.1	Tomato	nucleus, unclear	10.71	9.72
Solyc10g047050.1.1	Tomato	nucleus	13.25	9.47
Solyc11g069980.1.1	Tomato	cytosol	13.07	9.01
Solyc07g063080.2.1	Tomato	plastid	11.62	7.72
Solyc11g043200.1.1	Tomato	cytosol, nucleus	2.54	6.11

Protein Annotations

Gene3D:1.20.120.1240	MapMan:13.6.2.1	InterPro:Dynamin_SF	InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom
GO:GO:0000166	GO:GO:0000266	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	InterPro:IPR020850
UniProt:K4D888	PFAM:PF01031	PFAM:PF02212	PFscan:PS51388	PANTHER:PTHR11566	PANTHER:PTHR11566:SF62
SMART:SM00302	EnsemblPlantsGene:Solyc11g043210.1	EnsemblPlants:Solyc11g043210.1.1	UniParc:UPI000276A2BB	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:33320855..33331242

Molecular Weight (calculated)

61084.1 Da

IEP (calculated)

7.265

GRAVY (calculated)

-0.377

Length

551 amino acids

Sequence
(BLAST)

001: MPYGSALGSN ILKGGKSFVS SLTLRFEDGR SILVQHIKTV LPGLKSRISA ALVSVAKEHA SYGEITESKA GMGALLLNIL SKYSEAFSSM IEGKNEEMST
101: SELSGGARIH YIFQSIFVKS LEEVDPCEDL TDDDIRTAIQ NATGPKSALF VPEVPFEVLI RRQIARLLDP SLQCARFIYD ELIKMSHRCM VNELQRFPIL
201: RKRMDEVIGY FLREGLEPSE TMIGHIIEME MDYINTSHPN FVGGSKAVEM AMQQVKSNRI TVPAPRQKDG VDLEKAPASE RSLKSRAILA RHANGIVPDQ
301: VARPAAEEKT TTSGSNVSSS WGISSIFGGS DSRTSIKDNP ISKPFSEPVQ SMNHAFIHLR EPPSVLRPSE THSDQETIEI AVTKLLLRSY YDIVRKNIED
401: SVPKAIMHFL VNHTKRELHN VFIKKLYRDN LLEEMLQEPD EVALKRKRTR ETLRVLQQAF KTLDELPLEA ETVERGYSIG TDPTGLPKIH GLPTSSVYNS
501: SGSTDSYTAS PKNPRSRKSS HSGELQSPMY AGADSNGGGR NSLGLYPTVD M

Best Arabidopsis Sequence Match ( AT4G33650.1 )
(BLAST)

001: MTIEEVSGET PPSTPPSSST PSPSSSTTNA APLGSSVIPI VNKLQDIFAQ LGSQSTIALP QVVVVGSQSS GKSSVLEALV GRDFLPRGND ICTRRPLVLQ
101: LLQTKSRANG GSDDEWGEFR HLPETRFYDF SEIRREIEAE TNRLVGENKG VADTQIRLKI SSPNVLNITL VDLPGITKVP VGDQPSDIEA RIRTMILSYI
201: KQDTCLILAV TPANTDLANS DALQIASIVD PDGHRTIGVI TKLDIMDKGT DARKLLLGNV VPLRLGYVGV VNRCQEDILL NRTVKEALLA EEKFFRSHPV
301: YHGLADRLGV PQLAKKLNQI LVQHIKVLLP DLKSRISNAL VATAKEHQSY GELTESRAGQ GALLLNFLSK YCEAYSSLLE GKSEEMSTSE LSGGARIHYI
401: FQSIFVKSLE EVDPCEDLTD DDIRTAIQNA TGPRSALFVP DVPFEVLVRR QISRLLDPSL QCARFIFEEL IKISHRCMMN ELQRFPVLRK RMDEVIGDFL
501: REGLEPSEAM IGDIIDMEMD YINTSHPNFI GGTKAVEAAM HQVKSSRIPH PVARPKDTVE PDRTSSSTSQ VKSRSFLGRQ ANGIVTDQGV VSADAEKAQP
601: AANASDTRWG IPSIFRGGDT RAVTKDSLLN KPFSEAVEDM SHNLSMIYLK EPPAVLRPTE THSEQEAVEI QITKLLLRSY YDIVRKNIED SVPKAIMHFL
701: VNHTKRELHN VFIKKLYREN LFEEMLQEPD EIAVKRKRTQ ETLHVLQQAY RTLDELPLEA DSVSAGMSKH QELLTSSKYS TSSSYSASPS TTRRSRRAGD
801: QHQNGYGF

Arabidopsis Description

DRP3ANOXY15 [Source:UniProtKB/TrEMBL;Acc:A0A178UUQ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.