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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, plastid

Predictor Summary:
  • nucleus 1
  • cytosol 4
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:mitochondrion
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc01g095970.2.1 Tomato plastid 93.43 93.28
VIT_15s0046g00470.t01 Wine grape cytosol 88.18 87.46
Os05t0556100-01 Rice plasma membrane 87.36 87.36
GSMUA_Achr1P04880_001 Banana cytosol 87.19 87.05
EES19921 Sorghum cytosol 85.88 85.88
TraesCS1B01G411700.3 Wheat cytosol 85.55 85.55
TraesCS1A01G385400.2 Wheat cytosol, golgi, nucleus, unclear 85.22 85.22
TraesCS1D01G393000.2 Wheat cytosol 85.22 85.22
KRH47905 Soybean cytosol, endoplasmic reticulum 84.73 84.73
EES01270 Sorghum cytosol 84.24 84.24
AT3G61760.1 Thale cress cytosol 83.42 83.28
CDY25074 Canola cytosol 83.42 83.28
CDX67862 Canola cytosol 83.25 83.11
Bra003469.1-P Field mustard cytosol 78.33 82.96
Os01t0681100-01 Rice cytosol, plasma membrane 24.79 82.07
KRH06461 Soybean cytosol 68.47 80.35
Zm00001d009504_P002 Maize cytosol 85.39 79.27
Zm00001d038955_P001 Maize cytosol, mitochondrion, plasma membrane 85.88 78.06
HORVU1Hr1G084970.2 Barley plasma membrane 85.55 77.07
Solyc01g088510.2.1 Tomato nucleus 58.62 69.73
Solyc08g077360.2.1 Tomato plastid 69.79 69.67
Solyc10g062160.1.1 Tomato plastid 66.01 68.72
Solyc01g005310.2.1 Tomato plastid 68.97 67.52
TraesCS6B01G443600.1 Wheat cytosol 42.04 48.95
TraesCS6D01G385300.1 Wheat cytosol 37.11 45.66
Solyc11g043200.1.1 Tomato cytosol, nucleus 15.93 42.36
Solyc11g043170.1.1 Tomato cytosol 11.17 41.72
Solyc08g006600.2.1 Tomato plastid 35.47 28.61
Solyc01g106050.2.1 Tomato plastid 37.27 27.62
Solyc04g072030.1.1 Tomato cytosol 26.44 23.85
Solyc01g103130.1.1 Tomato nucleus, unclear 22.66 22.73
Solyc11g039650.1.1 Tomato cytosol, nucleus, plastid 28.41 18.82
Solyc11g069980.1.1 Tomato cytosol 24.3 18.52
Solyc10g047050.1.1 Tomato nucleus 20.2 15.95
Solyc11g043210.1.1 Tomato nucleus 14.29 15.79
Solyc07g063080.2.1 Tomato plastid 20.69 15.2
Solyc11g070010.1.1 Tomato cytosol 8.05 12.47
Solyc01g103120.2.1 Tomato cytosol 4.43 9.15
Protein Annotations
Gene3D:1.20.120.1240MapMan:22.1.7.1Gene3D:3.40.50.300ncoils:CoilInterPro:Dynamin_GTPaseInterPro:Dynamin_GTPase_CS
InterPro:Dynamin_SFInterPro:Dynamin_centralInterPro:GEDInterPro:GED_domGO:GO:0000166GO:GO:0000266
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005515GO:GO:0005525
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0008017GO:GO:0008150
GO:GO:0009987GO:GO:0016043GO:GO:0016787InterPro:G_DYNAMIN_domInterPro:IPR020850InterPro:IPR030381
UniProt:K4C192InterPro:P-loop_NTPasePFAM:PF00350PFAM:PF01031PFAM:PF02212PRINTS:PR00195
ScanProsite:PS00410PFscan:PS51388PFscan:PS51718PANTHER:PTHR11566PANTHER:PTHR11566:SF60SMART:SM00053
SMART:SM00302SUPFAM:SSF52540EnsemblPlantsGene:Solyc05g050600.2EnsemblPlants:Solyc05g050600.2.1UniParc:UPI0002767222SEG:seg
Description
No Description!
Coordinates
chr5:+:60752501..60763534
Molecular Weight (calculated)
68274.3 Da
IEP (calculated)
7.936
GRAVY (calculated)
-0.316
Length
609 amino acids
Sequence
(BLAST)
001: MENLIALVNR LQRACTALGD HGEESSLPTL WDALPTIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLHRIE EGREYAEFGH LPRKRFTDFA
101: AVRKEIADET DRETGRSKQI SSVPIYLSIY SPNVVNLTLI DLPGLTKVAV EGQPDSIVLD IENMVRSYIE KPNCIILAIS PANQDLATSD AIKISREVDP
201: KGERTFGVLT KIDLMDKGTD AVDMLEGKSY KLQFPWIGVV NRSQADINKN VDMIAARRRE REYFSSTPEY RHLANRMGSE HLGKVLSKHL ESVIKSRIPG
301: LQSLINKTII ELETELSRLG KPIATDAGGK LYMIMEICRS FDGNFKEHLD GVRPGGDKIY YVFDNQLPAA LKRLQFDKQL SMENVRKLIT EADGYQPHLI
401: APEQGYRRLI ESSIVSMKGP AEAAVDAVHA ILKELIHKAI SETAELKQYP SLRVEVSNAA VESLERMRDE SKKATLQLVE MECSYLTVDF FRKLPQDIEK
501: GGNPTHSIFD RYNDSYLRRI GSNVLSYVNM VCATLRNSIP KSVVYGQVRE AKRSLLDHFF TDLGKKEGKQ LGTLLDEDPA IMQRRLSLAK RLELYRAAQA
601: EIDSVAWSK
Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)
001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK
Arabidopsis Description
DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.