Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
22908117
nucleus: 25464976 plastid: 26371478 unclear: 26455813 nucleus: 28394025 endoplasmic reticulum: 29145071 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc01g095970.2.1 | Tomato | plastid | 93.43 | 93.28 |
VIT_15s0046g00470.t01 | Wine grape | cytosol | 88.18 | 87.46 |
Os05t0556100-01 | Rice | plasma membrane | 87.36 | 87.36 |
GSMUA_Achr1P04880_001 | Banana | cytosol | 87.19 | 87.05 |
EES19921 | Sorghum | cytosol | 85.88 | 85.88 |
TraesCS1B01G411700.3 | Wheat | cytosol | 85.55 | 85.55 |
TraesCS1A01G385400.2 | Wheat | cytosol, golgi, nucleus, unclear | 85.22 | 85.22 |
TraesCS1D01G393000.2 | Wheat | cytosol | 85.22 | 85.22 |
KRH47905 | Soybean | cytosol, endoplasmic reticulum | 84.73 | 84.73 |
EES01270 | Sorghum | cytosol | 84.24 | 84.24 |
AT3G61760.1 | Thale cress | cytosol | 83.42 | 83.28 |
CDY25074 | Canola | cytosol | 83.42 | 83.28 |
CDX67862 | Canola | cytosol | 83.25 | 83.11 |
Bra003469.1-P | Field mustard | cytosol | 78.33 | 82.96 |
Os01t0681100-01 | Rice | cytosol, plasma membrane | 24.79 | 82.07 |
KRH06461 | Soybean | cytosol | 68.47 | 80.35 |
Zm00001d009504_P002 | Maize | cytosol | 85.39 | 79.27 |
Zm00001d038955_P001 | Maize | cytosol, mitochondrion, plasma membrane | 85.88 | 78.06 |
HORVU1Hr1G084970.2 | Barley | plasma membrane | 85.55 | 77.07 |
Solyc01g088510.2.1 | Tomato | nucleus | 58.62 | 69.73 |
Solyc08g077360.2.1 | Tomato | plastid | 69.79 | 69.67 |
Solyc10g062160.1.1 | Tomato | plastid | 66.01 | 68.72 |
Solyc01g005310.2.1 | Tomato | plastid | 68.97 | 67.52 |
TraesCS6B01G443600.1 | Wheat | cytosol | 42.04 | 48.95 |
TraesCS6D01G385300.1 | Wheat | cytosol | 37.11 | 45.66 |
Solyc11g043200.1.1 | Tomato | cytosol, nucleus | 15.93 | 42.36 |
Solyc11g043170.1.1 | Tomato | cytosol | 11.17 | 41.72 |
Solyc08g006600.2.1 | Tomato | plastid | 35.47 | 28.61 |
Solyc01g106050.2.1 | Tomato | plastid | 37.27 | 27.62 |
Solyc04g072030.1.1 | Tomato | cytosol | 26.44 | 23.85 |
Solyc01g103130.1.1 | Tomato | nucleus, unclear | 22.66 | 22.73 |
Solyc11g039650.1.1 | Tomato | cytosol, nucleus, plastid | 28.41 | 18.82 |
Solyc11g069980.1.1 | Tomato | cytosol | 24.3 | 18.52 |
Solyc10g047050.1.1 | Tomato | nucleus | 20.2 | 15.95 |
Solyc11g043210.1.1 | Tomato | nucleus | 14.29 | 15.79 |
Solyc07g063080.2.1 | Tomato | plastid | 20.69 | 15.2 |
Solyc11g070010.1.1 | Tomato | cytosol | 8.05 | 12.47 |
Solyc01g103120.2.1 | Tomato | cytosol | 4.43 | 9.15 |
Protein Annotations
Gene3D:1.20.120.1240 | MapMan:22.1.7.1 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:Dynamin_GTPase | InterPro:Dynamin_GTPase_CS |
InterPro:Dynamin_SF | InterPro:Dynamin_central | InterPro:GED | InterPro:GED_dom | GO:GO:0000166 | GO:GO:0000266 |
GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005525 |
GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0008017 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | InterPro:G_DYNAMIN_dom | InterPro:IPR020850 | InterPro:IPR030381 |
UniProt:K4C192 | InterPro:P-loop_NTPase | PFAM:PF00350 | PFAM:PF01031 | PFAM:PF02212 | PRINTS:PR00195 |
ScanProsite:PS00410 | PFscan:PS51388 | PFscan:PS51718 | PANTHER:PTHR11566 | PANTHER:PTHR11566:SF60 | SMART:SM00053 |
SMART:SM00302 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc05g050600.2 | EnsemblPlants:Solyc05g050600.2.1 | UniParc:UPI0002767222 | SEG:seg |
Description
No Description!
Coordinates
chr5:+:60752501..60763534
Molecular Weight (calculated)
68274.3 Da
IEP (calculated)
7.936
GRAVY (calculated)
-0.316
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MENLIALVNR LQRACTALGD HGEESSLPTL WDALPTIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLHRIE EGREYAEFGH LPRKRFTDFA
101: AVRKEIADET DRETGRSKQI SSVPIYLSIY SPNVVNLTLI DLPGLTKVAV EGQPDSIVLD IENMVRSYIE KPNCIILAIS PANQDLATSD AIKISREVDP
201: KGERTFGVLT KIDLMDKGTD AVDMLEGKSY KLQFPWIGVV NRSQADINKN VDMIAARRRE REYFSSTPEY RHLANRMGSE HLGKVLSKHL ESVIKSRIPG
301: LQSLINKTII ELETELSRLG KPIATDAGGK LYMIMEICRS FDGNFKEHLD GVRPGGDKIY YVFDNQLPAA LKRLQFDKQL SMENVRKLIT EADGYQPHLI
401: APEQGYRRLI ESSIVSMKGP AEAAVDAVHA ILKELIHKAI SETAELKQYP SLRVEVSNAA VESLERMRDE SKKATLQLVE MECSYLTVDF FRKLPQDIEK
501: GGNPTHSIFD RYNDSYLRRI GSNVLSYVNM VCATLRNSIP KSVVYGQVRE AKRSLLDHFF TDLGKKEGKQ LGTLLDEDPA IMQRRLSLAK RLELYRAAQA
601: EIDSVAWSK
101: AVRKEIADET DRETGRSKQI SSVPIYLSIY SPNVVNLTLI DLPGLTKVAV EGQPDSIVLD IENMVRSYIE KPNCIILAIS PANQDLATSD AIKISREVDP
201: KGERTFGVLT KIDLMDKGTD AVDMLEGKSY KLQFPWIGVV NRSQADINKN VDMIAARRRE REYFSSTPEY RHLANRMGSE HLGKVLSKHL ESVIKSRIPG
301: LQSLINKTII ELETELSRLG KPIATDAGGK LYMIMEICRS FDGNFKEHLD GVRPGGDKIY YVFDNQLPAA LKRLQFDKQL SMENVRKLIT EADGYQPHLI
401: APEQGYRRLI ESSIVSMKGP AEAAVDAVHA ILKELIHKAI SETAELKQYP SLRVEVSNAA VESLERMRDE SKKATLQLVE MECSYLTVDF FRKLPQDIEK
501: GGNPTHSIFD RYNDSYLRRI GSNVLSYVNM VCATLRNSIP KSVVYGQVRE AKRSLLDHFF TDLGKKEGKQ LGTLLDEDPA IMQRRLSLAK RLELYRAAQA
601: EIDSVAWSK
001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK
Arabidopsis Description
DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.