Factsheet for TraesCS1A01G385400.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G385400.2
TraesCS1B01G411700.3
TraesCS1D01G393000.2
TraesCS4A01G247700.1
TraesCS4B01G067100.1
TraesCS4B01G067200.1
TraesCS4D01G066100.1
TraesCS5A01G293000.1
TraesCS5B01G292200.1
TraesCS5D01G300300.2
TraesCS6A01G147100.1
TraesCS6A01G312300.3
TraesCS6B01G175300.1
TraesCS6B01G342500.2
TraesCS6B01G443600.1
TraesCS6D01G136400.1
TraesCS6D01G291700.1
TraesCS6D01G385300.1
TraesCS7A01G198100.1
TraesCS7A01G263800.2
TraesCS7B01G104500.1
TraesCS7B01G161800.1
TraesCS7D01G200900.1
TraesCS7D01G264700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G42080.1	TraesCS4A01G247700.1	AT1G08560.1	19959995
AT5G42080.1	TraesCS4B01G067100.1	AT1G08560.1	19959995
AT5G42080.1	TraesCS4B01G067200.1	AT1G08560.1	19959995
AT5G42080.1	TraesCS4D01G066100.1	AT1G08560.1	19959995
AT5G42080.1	TraesCS6A01G147100.1	AT1G08560.1	19959995
AT5G42080.1	TraesCS6B01G175300.1	AT1G08560.1	19959995
AT5G42080.1	TraesCS6D01G136400.1	AT1G08560.1	19959995
AT5G42080.1	TraesCS6A01G312300.3	AT1G59610.1	20231465
AT5G42080.1	TraesCS6B01G342500.2	AT1G59610.1	20231465
AT5G42080.1	TraesCS6D01G291700.1	AT1G59610.1	20231465
AT5G42080.1	TraesCS7A01G198100.1	AT1G59610.1	20231465
AT5G42080.1	TraesCS7B01G104500.1	AT1G59610.1	20231465
AT5G42080.1	TraesCS7D01G200900.1	AT1G59610.1	20231465
AT5G42080.1	TraesCS5A01G293000.1	AT5G13300.1	15923323
AT5G42080.1	TraesCS5B01G292200.1	AT5G13300.1	15923323
AT5G42080.1	TraesCS5D01G300300.2	AT5G13300.1	15923323
AT5G42080.1	TraesCS7A01G263800.2	AT5G13300.1	15923323
AT5G42080.1	TraesCS7B01G161800.1	AT5G13300.1	15923323
AT5G42080.1	TraesCS7D01G264700.1	AT5G13300.1	15923323
AT5G42080.1	TraesCS1A01G385400.2	AT5G42080.1	19144001
AT5G42080.1	TraesCS1B01G411700.3	AT5G42080.1	19144001
AT5G42080.1	TraesCS1D01G393000.2	AT5G42080.1	19144001
AT5G42080.1	TraesCS6B01G443600.1	AT5G42080.1	19144001
AT5G42080.1	TraesCS6D01G385300.1	AT5G42080.1	19144001
AT5G42080.1	TraesCS1A01G385400.2	AT5G42080.1	20231465
AT5G42080.1	TraesCS1B01G411700.3	AT5G42080.1	20231465
AT5G42080.1	TraesCS1D01G393000.2	AT5G42080.1	20231465
AT5G42080.1	TraesCS6B01G443600.1	AT5G42080.1	20231465
AT5G42080.1	TraesCS6D01G385300.1	AT5G42080.1	20231465

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G393000.2	Wheat	cytosol	100.0	100.0
TraesCS1B01G411700.3	Wheat	cytosol	99.34	99.34
Os05t0556100-01	Rice	plasma membrane	94.91	94.91
EES19921	Sorghum	cytosol	93.1	93.1
HORVU1Hr1G084970.2	Barley	plasma membrane	99.34	89.5
GSMUA_Achr8P27540_001	Banana	cytosol	88.34	88.34
VIT_02s0025g01570.t01	Wine grape	cytosol, extracellular	87.19	87.19
GSMUA_Achr6P26600_001	Banana	cytosol	86.7	86.7
Zm00001d009504_P002	Maize	cytosol	92.28	85.67
KRH60047	Soybean	endoplasmic reticulum	85.39	85.25
Solyc05g050600.2.1	Tomato	nucleus, plastid	85.22	85.22
KRH41321	Soybean	endoplasmic reticulum, nucleus	85.06	84.92
Solyc01g095970.2.1	Tomato	plastid	84.24	84.1
PGSC0003DMT400000646	Potato	cytosol	84.24	84.1
Zm00001d038955_P001	Maize	cytosol, mitochondrion, plasma membrane	92.45	84.03
KRH77654	Soybean	endoplasmic reticulum	84.07	83.93
KRH27831	Soybean	cytosol, endoplasmic reticulum, nucleus	83.42	83.28
KRH47905	Soybean	cytosol, endoplasmic reticulum	83.25	83.25
Bra003469.1-P	Field mustard	cytosol	78.49	83.13
CDY25074	Canola	cytosol	83.25	83.11
CDX67862	Canola	cytosol	83.25	83.11
CDX67529	Canola	cytosol	83.09	82.95
AT3G61760.1	Thale cress	cytosol	82.92	82.79
CDY13364	Canola	cytosol	82.92	82.79
Bra028525.1-P	Field mustard	cytosol	82.92	82.79
CDY27661	Canola	cytosol	82.59	82.46
Bra025448.1-P	Field mustard	cytosol	78.65	82.16
AT5G42080.1	Thale cress	cytosol	82.27	82.13
CDX99702	Canola	cytosol	82.1	81.97
KRH06461	Soybean	cytosol	66.5	78.03
TraesCS4A01G266600.1	Wheat	cytosol	67.65	67.54
TraesCS1A01G213900.2	Wheat	cytosol	67.16	65.44
TraesCS3A01G428000.2	Wheat	cytosol, plastid	35.96	27.38
TraesCS2A01G281000.2	Wheat	cytosol	34.65	27.23
TraesCS4A01G213700.1	Wheat	cytosol	23.32	23.99
TraesCS4A01G086700.1	Wheat	cytosol	25.12	23.04
TraesCS7A01G198100.1	Wheat	cytosol, nucleus, plasma membrane	27.91	18.83
TraesCS6A01G312300.3	Wheat	nucleus	27.42	18.35
TraesCS3A01G273500.1	Wheat	plastid	22.0	16.4
TraesCS5A01G114600.1	Wheat	cytosol	18.39	14.64

Protein Annotations

Gene3D:1.20.120.1240	MapMan:22.1.7.1	Gene3D:3.40.50.300	InterPro:Dynamin_GTPase	InterPro:Dynamin_GTPase_CS	InterPro:Dynamin_SF
InterPro:Dynamin_central	InterPro:GED	InterPro:GED_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:G_DYNAMIN_dom	InterPro:IPR020850
InterPro:IPR030381	InterPro:P-loop_NTPase	PFAM:PF00350	PFAM:PF01031	PFAM:PF02212	PRINTS:PR00195
ScanProsite:PS00410	PFscan:PS51388	PFscan:PS51718	PANTHER:PTHR11566	PANTHER:PTHR11566:SF138	SMART:SM00053
SMART:SM00302	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS1A01G385400	EnsemblPlants:TraesCS1A01G385400.2	TIGR:cd08771	SEG:seg

Description

No Description!

Coordinates

chr1A:-:554527514..554534895

Molecular Weight (calculated)

68552.6 Da

IEP (calculated)

7.987

GRAVY (calculated)

-0.325

Length

609 amino acids

Sequence
(BLAST)

001: MENLISLVNK LQRACTALGD HGEESALPTL WDSLPSIAVV GGQSSGKSSV LESVVGKDFL PRGSGIVTRR PLVLQLHRID GDREYAEFMH VPRKRFTDFA
101: MVRKEIADET DRQTGHGKGI SSVPIHLSIF SPNVVNLTLI DLPGLTKVAV EGQPESIVQE IENMVRAFIE KPNCIILAVS PANQDLATSD AIKISREVDP
201: KGERTFGVLT KIDLMDKGTD AVDILEGRAY RLQFPWIGVV NRSQQDINKS VDMIAARRRE RDYFANTPEY KHLAHRMGSE HLAKSLSKHL ESVIKSRIPG
301: LQSLITKTVA ELETELTRLG KPIANDAGGK LYTIMEICRM FDGIYKEHLD GVRPGGEKIY HVFDNQFPVA IKRLQFDKQL SMENVRKLIT EADGYQPHLI
401: APEQGYRRLI ESCLVSIRGP AEAAVDTVHG ILKELVHKAI NETHELKQFP TLRVEVGNAA FESLERMRDE SKKNTLKLVD METSYLTVDF FRKLPQDVEK
501: GGNPSHSIFD RYNDSYLRRI GTTVLAYVNM VSSTLRNSIP KSIVYCQVRE AKRSLLDHFF TELGAREIRQ LSKLLDEDPA VMERRTNLAK RLELYRSAQA
601: EIDAVAWSK

Best Arabidopsis Sequence Match ( AT5G42080.1 )
(BLAST)

001: MENLISLVNK IQRACTALGD HGDSSALPTL WDSLPAIAVV GGQSSGKSSV LESIVGKDFL PRGSGIVTRR PLVLQLQKID DGTREYAEFL HLPRKKFTDF
101: AAVRKEIQDE TDRETGRSKA ISSVPIHLSI YSPNVVNLTL IDLPGLTKVA VDGQSDSIVK DIENMVRSYI EKPNCIILAI SPANQDLATS DAIKISREVD
201: PSGDRTFGVL TKIDLMDKGT DAVEILEGRS FKLKYPWVGV VNRSQADINK NVDMIAARKR EREYFSNTTE YRHLANKMGS EHLAKMLSKH LERVIKSRIP
301: GIQSLINKTV LELETELSRL GKPIAADAGG KLYSIMEICR LFDQIFKEHL DGVRAGGEKV YNVFDNQLPA ALKRLQFDKQ LAMDNIRKLV TEADGYQPHL
401: IAPEQGYRRL IESSIVSIRG PAEASVDTVH AILKDLVHKS VNETVELKQY PALRVEVTNA AIESLDKMRE GSKKATLQLV DMECSYLTVD FFRKLPQDVE
501: KGGNPTHSIF DRYNDSYLRR IGSNVLSYVN MVCAGLRNSI PKSIVYCQVR EAKRSLLDHF FAELGTMDMK RLSSLLNEDP AIMERRSAIS KRLELYRAAQ
601: SEIDAVAWSK

Arabidopsis Description

DRP1ARSW9 [Source:UniProtKB/TrEMBL;Acc:A0A178UEJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.