Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G066100.1 | Wheat | cytosol | 97.45 | 96.84 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 96.18 | 95.57 |
| TraesCS4B01G067100.1 | Wheat | cytosol | 48.09 | 92.64 |
| KXG37622 | Sorghum | cytosol | 82.17 | 82.69 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 81.21 | 81.99 |
| Zm00001d013323_P001 | Maize | cytosol | 81.21 | 81.21 |
| Zm00001d033919_P001 | Maize | plasma membrane | 80.89 | 81.15 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 92.99 | 80.44 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 50.64 | 64.9 |
| VIT_04s0008g02770.t01 | Wine grape | cytosol | 60.51 | 61.09 |
| Solyc06g053760.2.1 | Tomato | cytosol | 60.51 | 61.09 |
| PGSC0003DMT400041982 | Potato | cytosol | 60.19 | 60.77 |
| KRH08461 | Soybean | cytosol | 62.1 | 60.56 |
| KRH70119 | Soybean | cytosol | 60.83 | 60.06 |
| Bra030733.1-P | Field mustard | cytosol | 54.78 | 56.58 |
| CDX97497 | Canola | cytosol | 54.46 | 56.44 |
| CDX95050 | Canola | cytosol | 55.1 | 56.35 |
| AT1G08560.1 | Thale cress | cytosol | 55.41 | 56.13 |
| CDX93553 | Canola | cytosol | 54.46 | 55.7 |
| CDY31137 | Canola | cytosol | 53.82 | 55.59 |
| Bra018615.1-P | Field mustard | cytosol | 54.14 | 55.37 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 43.63 | 44.92 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 40.45 | 41.5 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 41.4 | 40.62 |
| TraesCS2B01G244700.1 | Wheat | cytosol | 37.9 | 39.27 |
| TraesCS7B01G394300.1 | Wheat | cytosol | 37.9 | 39.14 |
| TraesCS2B01G263700.1 | Wheat | cytosol | 36.94 | 38.41 |
| TraesCS5B01G034800.1 | Wheat | cytosol | 35.67 | 36.96 |
| TraesCS5B01G035600.1 | Wheat | cytosol | 35.03 | 35.6 |
| TraesCS5B01G102700.1 | Wheat | cytosol | 32.8 | 33.66 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 31.21 | 32.03 |
| TraesCS2B01G238200.2 | Wheat | cytosol | 21.34 | 21.75 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:13.4.2.3.1 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 |
| PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF91 |
| SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCS4B01G067200 | EnsemblPlants:TraesCS4B01G067200.1 | TIGR:cd00179 | TIGR:cd15848 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:60074040..60074984
Molecular Weight (calculated)
34673.8 Da
IEP (calculated)
6.802
GRAVY (calculated)
-0.322
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFM SYVDLKKAAM KDLEAGGDET ELTQAGGGGA TDERLKGFFK EAEAVREEMA AIRDALARLH AANEEGKSLH QPDALRAMRV RVNADIVAVL
101: GRARGIQRAL ADMDAANAAQ RRLSAGCQEG TTLDRTRTSV TAGLRKKLKD IMNDFQALRQ RMMSEYKDTV ERRYYTLTGE VPEDEVIERI ISEGRGEEIM
201: SAAVAEHGKG AVLAALNEIQ DRHDAAREVE RSLLELHQVF VDMAVVVESQ GEKINDIAHH VSNARDYVHS GNKELGKARE HQRGSRKCLC IGIILLLLLI
301: LIVIVPIATS LKRS
101: GRARGIQRAL ADMDAANAAQ RRLSAGCQEG TTLDRTRTSV TAGLRKKLKD IMNDFQALRQ RMMSEYKDTV ERRYYTLTGE VPEDEVIERI ISEGRGEEIM
201: SAAVAEHGKG AVLAALNEIQ DRHDAAREVE RSLLELHQVF VDMAVVVESQ GEKINDIAHH VSNARDYVHS GNKELGKARE HQRGSRKCLC IGIILLLLLI
301: LIVIVPIATS LKRS
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.