Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g053760.2.1 | Tomato | cytosol | 97.11 | 97.11 |
| VIT_04s0008g02770.t01 | Wine grape | cytosol | 80.06 | 80.06 |
| KRH08461 | Soybean | cytosol | 76.85 | 74.22 |
| Bra030733.1-P | Field mustard | cytosol | 71.06 | 72.7 |
| CDX97497 | Canola | cytosol | 70.74 | 72.61 |
| CDX93553 | Canola | cytosol | 70.74 | 71.66 |
| KRH70119 | Soybean | cytosol | 72.99 | 71.38 |
| CDY31137 | Canola | cytosol | 69.77 | 71.38 |
| Bra018615.1-P | Field mustard | cytosol | 70.42 | 71.34 |
| CDX95050 | Canola | cytosol | 70.42 | 71.34 |
| AT1G08560.1 | Thale cress | cytosol | 68.17 | 68.39 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 53.05 | 67.35 |
| KXG37622 | Sorghum | cytosol | 64.63 | 64.42 |
| Zm00001d013323_P001 | Maize | cytosol | 64.31 | 63.69 |
| Zm00001d033919_P001 | Maize | plasma membrane | 63.67 | 63.26 |
| TraesCS4B01G067100.1 | Wheat | cytosol | 33.12 | 63.19 |
| Os03t0736500-01 | Rice | cytosol, plasma membrane | 61.09 | 61.09 |
| TraesCS4B01G067200.1 | Wheat | cytosol | 60.77 | 60.19 |
| TraesCS4D01G066100.1 | Wheat | cytosol | 61.09 | 60.13 |
| TraesCS4A01G247700.1 | Wheat | cytosol | 60.45 | 59.49 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 60.45 | 51.79 |
| PGSC0003DMT400054965 | Potato | cytosol | 47.59 | 49.33 |
| PGSC0003DMT400072325 | Potato | cytosol | 46.62 | 48.01 |
| PGSC0003DMT400035739 | Potato | cytosol | 47.59 | 47.74 |
| PGSC0003DMT400055777 | Potato | cytosol | 47.27 | 47.27 |
| PGSC0003DMT400001933 | Potato | cytosol | 42.12 | 44.71 |
| PGSC0003DMT400065519 | Potato | cytosol | 44.37 | 44.23 |
| PGSC0003DMT400009282 | Potato | cytosol, mitochondrion | 40.51 | 42.14 |
| PGSC0003DMT400072284 | Potato | cytosol | 39.87 | 40.0 |
| TraesCS6B01G175300.1 | Wheat | cytosol | 30.87 | 31.37 |
| TraesCS6D01G136400.1 | Wheat | cytosol | 30.87 | 31.37 |
| TraesCS6A01G147100.1 | Wheat | cytosol | 30.55 | 31.05 |
| HORVU6Hr1G028850.1 | Barley | cytosol | 29.9 | 30.39 |
| Zm00001d035331_P001 | Maize | cytosol | 27.65 | 28.86 |
| OQU78880 | Sorghum | cytosol | 27.65 | 27.92 |
| Os12t0192300-00 | Rice | plasma membrane | 30.55 | 27.3 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | EntrezGene:102589897 | MapMan:13.4.2.3.1 | MapMan:22.7.1.1 | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009504 | GO:GO:0009506 | GO:GO:0009524 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0061025 | InterPro:IPR000727 | UniProt:M1BCA9 |
| PFAM:PF00804 | PFAM:PF05739 | EnsemblPlantsGene:PGSC0003DMG400016283 | PGSC:PGSC0003DMG400016283 | EnsemblPlants:PGSC0003DMT400041982 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF91 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000295C39C |
| RefSeq:XP_006350673.1 | SEG:seg | : | : | : | : |
Description
Knolle [Source:PGSC_GENE;Acc:PGSC0003DMG400016283]
Coordinates
chr6:-:39889816..39891665
Molecular Weight (calculated)
35315.9 Da
IEP (calculated)
7.277
GRAVY (calculated)
-0.421
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLMTKSFT SYIDLKKAAM KDVEASPDLE MGMTQLDQNL TAFLEEAEKV KLEMNSIKEI LRRLQDTNEE SKSLHKPEAL KSMRDSINSD IVAVLKKARA
101: IRSQLEEMDR SNAINRRLSG CKEGTLVDRT RSAVTNGLRK KLKELMMEFQ GLRQRMMTEY KETVGRRYFT VTGEHPDEEV IDKIISSGNG QGGEEFLSRA
201: IQEHGRGKVL ETVVEIQDRH DAAKEIERSL LELHQIFLDM AVMVEAQGEK MDDIEHHVVN AAHYVNDGAK NLKTAKKYQK SSRKCMFIGV IVLLILILVV
301: IIPIATSFTK S
101: IRSQLEEMDR SNAINRRLSG CKEGTLVDRT RSAVTNGLRK KLKELMMEFQ GLRQRMMTEY KETVGRRYFT VTGEHPDEEV IDKIISSGNG QGGEEFLSRA
201: IQEHGRGKVL ETVVEIQDRH DAAKEIERSL LELHQIFLDM AVMVEAQGEK MDDIEHHVVN AAHYVNDGAK NLKTAKKYQK SSRKCMFIGV IVLLILILVV
301: IIPIATSFTK S
001: MNDLMTKSFM SYVDLKKAAM KDMEAGPDFD LEMASTKADK MDENLSSFLE EAEYVKAEMG LISETLARIE QYHEESKGVH KAESVKSLRN KISNEIVSGL
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
101: RKAKSIKSKL EEMDKANKEI KRLSGTPVYR SRTAVTNGLR KKLKEVMMEF QGLRQKMMSE YKETVERRYF TVTGEHANDE MIEKIITDNA GGEEFLTRAI
201: QEHGKGKVLE TVVEIQDRYD AAKEIEKSLL ELHQVFLDMA VMVESQGEQM DEIEHHVINA SHYVADGANE LKTAKSHQRN SRKWMCIGII VLLLIILIVV
301: IPIITSFSSS
Arabidopsis Description
KNSYP111 [Source:UniProtKB/TrEMBL;Acc:A0A178WAC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.