Factsheet for PGSC0003DMT400009282

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 4
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g085090.1.1	Tomato	cytosol	96.99	96.99
KRH76768	Soybean	cytosol	67.22	67.22
KRH28699	Soybean	cytosol	66.56	66.56
VIT_04s0043g00820.t01	Wine grape	cytosol	64.55	64.55
VIT_04s0023g01980.t01	Wine grape	cytosol	63.55	63.55
Bra024476.1-P	Field mustard	cytosol	55.85	58.39
CDY20921	Canola	cytosol	55.85	58.39
CDY29223	Canola	cytosol	55.85	58.19
AT2G18260.1	Thale cress	cytosol	59.2	58.03
Bra039622.1-P	Field mustard	cytosol	55.85	57.99
CDY46302	Canola	cytosol	55.85	57.99
PGSC0003DMT400001933	Potato	cytosol	55.18	56.31
CDY25157	Canola	cytosol	36.45	53.96
KRH59335	Soybean	cytosol	25.08	49.34
GSMUA_Achr10P...	Banana	cytosol	43.14	47.43
KRH43180	Soybean	cytosol	38.46	44.75
PGSC0003DMT400041982	Potato	cytosol	42.14	40.51
PGSC0003DMT400055777	Potato	cytosol	40.47	38.91
PGSC0003DMT400054965	Potato	cytosol	38.8	38.67
PGSC0003DMT400035739	Potato	cytosol	39.13	37.74
PGSC0003DMT400072325	Potato	cytosol	35.79	35.43
PGSC0003DMT400065519	Potato	cytosol	34.45	33.01
PGSC0003DMT400072284	Potato	cytosol	32.78	31.61

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:102585202	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR000727
UniProt:M0ZVX9	PFAM:PF00804	PFAM:PF05739	EnsemblPlantsGene:PGSC0003DMG400003603	PGSC:PGSC0003DMG400003603	EnsemblPlants:PGSC0003DMT400009282
PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF123	SMART:SM00397	SMART:SM00503	InterPro:SNARE
SUPFAM:SSF47661	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002950725	RefSeq:XP_006340640.1
SEG:seg	:	:	:	:	:

Description

Syntaxin [Source:PGSC_GENE;Acc:PGSC0003DMG400003603]

Coordinates

chr2:+:40335049..40335948

Molecular Weight (calculated)

34135.2 Da

IEP (calculated)

6.082

GRAVY (calculated)

-0.374

Length

299 amino acids

Sequence
(BLAST)

001: MNDLMTKSFL SYVELKKQAH LDLETERDLE MGQLNRTDED NLSNFFREIE AVKGDIQEIT NLLIDLQNLN EETKTTHGPK VLRGIRDRMD SDMVSVLRKA
101: KIVKAKLEAL DKSNVGNRKL SVAYAQGTVV DRTRVNMTNG LRVKLRDIMN DFQALREKIL SDYKDCLRRR YYNETGKEPT EEVIEKMVSG ESGKVQIFAA
201: KTEMNLDDTD RHEAVMDIKK SLDKLHQVFL DMAVLVETQG EQIDDIEHNM AIAGSFISGG TNSLFYAKQQ QKKGRAWICW VWAVVLIILV VCLIATLSS

Best Arabidopsis Sequence Match ( AT2G18260.1 )
(BLAST)

001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR

Arabidopsis Description

SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.