Factsheet for VIT_04s0043g00820.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g01980.t01	Wine grape	cytosol	97.99	97.99
KRH76768	Soybean	cytosol	66.89	66.89
KRH28699	Soybean	cytosol	66.56	66.56
VIT_03s0038g04720.t01	Wine grape	cytosol	65.22	65.22
Solyc02g085090.1.1	Tomato	cytosol	64.55	64.55
PGSC0003DMT400009282	Potato	cytosol, mitochondrion	64.55	64.55
CDY20921	Canola	cytosol	58.86	61.54
Bra039622.1-P	Field mustard	cytosol	59.2	61.46
CDY46302	Canola	cytosol	59.2	61.46
Bra024476.1-P	Field mustard	cytosol	58.53	61.19
AT2G18260.1	Thale cress	cytosol	61.87	60.66
CDY29223	Canola	cytosol	57.86	60.28
CDY25157	Canola	cytosol	38.46	56.93
KRH59335	Soybean	cytosol	26.09	51.32
GSMUA_Achr10P...	Banana	cytosol	46.15	50.74
KRH43180	Soybean	cytosol	39.46	45.91
VIT_04s0008g02770.t01	Wine grape	cytosol	39.46	37.94
VIT_12s0059g02060.t01	Wine grape	cytosol	37.12	36.39
VIT_00s0404g00100.t01	Wine grape	cytosol	36.79	35.71
VIT_08s0032g01150.t01	Wine grape	cytosol	37.46	34.57
VIT_12s0059g02340.t01	Wine grape	cytosol	31.44	30.92
VIT_08s0032g00440.t01	Wine grape	cytosol	31.44	30.62

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100246772	wikigene:100246772	MapMan:22.7.1.1	EMBL:AM434196
ProteinID:CAN76010	ProteinID:CAN76010.1	ProteinID:CCB51876	ProteinID:CCB51876.1	ncoils:Coil	UniProt:F6HI29
EMBL:FN595763	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810
GO:GO:0006886	GO:GO:0006887	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278
InterPro:IPR000727	EntrezGene:LOC100246772	wikigene:LOC100246772	PFAM:PF00804	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF123	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin_N
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00015CA4CF	ArrayExpress:VIT_04s0043g00820	EnsemblPlantsGene:VIT_04s0043g00820	EnsemblPlants:VIT_04s0043g00820.t01
RefSeq:XP_002268695	RefSeq:XP_002268695.1	RefSeq:XP_019074791.1	RefSeq:XP_019074792.1	RefSeq:XP_019074793.1	RefSeq:XP_019074794.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:15123328..15124234

Molecular Weight (calculated)

34276.3 Da

IEP (calculated)

6.826

GRAVY (calculated)

-0.466

Length

299 amino acids

Sequence
(BLAST)

001: MNDLMTKSFL SYVELKKQAE MDLEAEAEAD IEIGKLKPKD EENLSQFFEE VAAIKTVMEE ITNLVRDLHN LNEETKSTHS AKVLRGLRDR MDSNALTILR
101: KAKVVKARLE AIDKSNVRNR RISEAYREGS PVDRTRISVT NGLRSKLRDM MNDFNSLRER ILWDHRETLK RRYYNATGSE ASEEVVEKMM TGSVQIEAFE
201: GKTGGDLVNR ERNEALREIQ RSLDKLRQVF LDMAVLVESQ GEKMDDIEEN VAIAGNFISG GTNSLVYAKQ MKKGKKWVYW VWAVGLIILL VCFISMLTS

Best Arabidopsis Sequence Match ( AT2G18260.1 )
(BLAST)

001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR

Arabidopsis Description

SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.