Factsheet for Solyc02g085090.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009282	Potato	cytosol, mitochondrion	96.99	96.99
KRH76768	Soybean	cytosol	66.56	66.56
KRH28699	Soybean	cytosol	65.89	65.89
VIT_04s0043g00820.t01	Wine grape	cytosol	64.55	64.55
VIT_04s0023g01980.t01	Wine grape	cytosol	63.55	63.55
CDY20921	Canola	cytosol	56.19	58.74
AT2G18260.1	Thale cress	cytosol	59.87	58.69
CDY46302	Canola	cytosol	56.19	58.33
Bra039622.1-P	Field mustard	cytosol	56.19	58.33
CDY29223	Canola	cytosol	55.85	58.19
Bra024476.1-P	Field mustard	cytosol	55.52	58.04
Solyc01g109750.2.1	Tomato	cytosol	52.17	55.71
CDY25157	Canola	cytosol	37.12	54.95
KRH59335	Soybean	cytosol	24.75	48.68
GSMUA_Achr10P...	Banana	cytosol	43.14	47.43
KRH43180	Soybean	cytosol	38.13	44.36
Solyc06g053760.2.1	Tomato	cytosol	42.81	41.16
Solyc01g006950.2.1	Tomato	nucleus	40.47	40.33
Solyc12g005580.1.1	Tomato	cytosol	39.13	37.74
Solyc10g081850.1.1	Tomato	cytosol	36.45	35.97
Solyc01g056810.2.1	Tomato	cytosol	28.43	33.6
Solyc07g052470.2.1	Tomato	cytosol	34.11	33.44
Solyc10g081580.1.1	Tomato	cytosol, plastid	33.11	31.94

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906
GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	UniProt:K4BB23	PFAM:PF00804
PFAM:PF05739	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF123	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	EnsemblPlantsGene:Solyc02g085090.1	EnsemblPlants:Solyc02g085090.1.1	InterPro:Syntaxin_N	TMHMM:TMhelix
InterPro:T_SNARE_dom	UniParc:UPI000276903D	SEG:seg	:	:	:

Description

Syntaxin-112 [Source:Projected from Arabidopsis thaliana (AT2G18260) UniProtKB/Swiss-Prot;Acc:Q9ZPV9]

Coordinates

chr2:+:48090432..48091331

Molecular Weight (calculated)

34157.3 Da

IEP (calculated)

6.384

GRAVY (calculated)

-0.395

Length

299 amino acids

Sequence
(BLAST)

001: MNDLMTKSFL SYMELKKQAH LDLETERDLE MGQLSRTDED NLSNFFREIE AVKGDIQEIT NLLMDLQNLN EETKTTHGPK VLRGIRDRMD SDMVSVLRKA
101: KIVKAKLEAL DKSNVGNRKL SVAYAQGSVV DRTRVSMSNG LRVKLRDIMN DFQALREKIL SDYKDCLRRR YYNETGKEPN EEVIEKMVSG ESGKVQIFAA
201: KTEMNLDDKD RHEAVMDIKK SLDKLHQVFL DMAVLVETQG EQIDDIEHNM AIAGSFISGG TNSLFYAKQQ QKKGRAWICW VWAVLLIILV VCLIATLSS

Best Arabidopsis Sequence Match ( AT2G18260.1 )
(BLAST)

001: MNDLMTKSFL SYVELKKQAR TDMESDRDLE KGEDFNFDFS PADEENLSGF FQEIETIKTL IEEITHLLLD LQNLNEETKS THSTKILRGL RDRMESNIVT
101: ISRKANTVKT LIETLEKRNV ANRTSFKEGS CVDRTRTSIT NGVRKKLRDT MSEFHRLRER IFADYREDLK RKYFLATGEE PSNEDMEKMI SGSGSCSDLV
201: KTFEVKPEMD LKTKERHEAV NDIKRSLNRL HQVFLDMAVL VETQGDRIDD IEANVANAGS FVSGGTNSLY YANQMKKKTK SWVLWVSILG VLILLVCVIS
301: MLASR

Arabidopsis Description

SYP112SYP112 [Source:UniProtKB/TrEMBL;Acc:A0A178VPA2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.