Factsheet for Solyc10g081580.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

vacuole 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, golgi, mitochondrion, vacuole
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400072284	Potato	cytosol	98.71	98.71
Solyc01g056810.2.1	Tomato	cytosol	72.58	88.93
VIT_08s0032g00440.t01	Wine grape	cytosol	81.61	82.41
KRH08507	Soybean	cytosol	79.35	79.87
Bra005968.1-P	Field mustard	cytosol	77.74	79.28
Bra009318.1-P	Field mustard	cytosol	76.77	78.55
Bra028672.1-P	Field mustard	cytosol	76.45	78.22
KRH70169	Soybean	cytosol	36.45	76.87
CDY51747	Canola	cytosol	32.58	74.81
AT5G08080.3	Thale cress	cytosol	75.81	74.6
CDY21160	Canola	cytosol	31.94	74.44
CDY50666	Canola	cytosol	31.94	73.33
CDY29963	Canola	cytosol	70.97	70.97
CDY51748	Canola	cytosol	40.0	70.06
CDY50665	Canola	cytosol	39.03	69.54
TraesCS2D01G248900.1	Wheat	cytosol	67.74	69.54
TraesCS2B01G263700.1	Wheat	cytosol	67.74	69.54
EER98026	Sorghum	cytosol	67.42	68.98
GSMUA_Achr2P17410_001	Banana	cytosol	65.48	68.81
Zm00001d007902_P001	Maize	mitochondrion, plasma membrane	67.1	68.42
GSMUA_Achr2P01540_001	Banana	cytosol	64.84	67.45
CDY21161	Canola	cytosol	38.71	67.04
TraesCS7A01G481800.1	Wheat	cytosol	65.48	66.78
TraesCS7B01G394300.1	Wheat	cytosol	65.48	66.78
HORVU6Hr1G095330.1	Barley	cytosol	63.55	65.45
TraesCS5B01G034800.1	Wheat	cytosol	63.23	64.69
Solyc07g052470.2.1	Tomato	cytosol	63.55	64.59
Os06t0168500-01	Rice	plasma membrane	62.9	63.93
HORVU5Hr1G026120.1	Barley	cytosol	62.26	63.07
TraesCS5B01G035600.1	Wheat	cytosol	62.58	62.78
TraesCS2A01G246600.1	Wheat	cytosol	67.1	62.46
TraesCS5B01G102700.1	Wheat	cytosol	60.97	61.76
EES16084	Sorghum	cytosol	60.97	61.56
TraesCS5D01G109500.1	Wheat	cytosol	60.65	61.44
TraesCS5A01G096800.1	Wheat	cytosol	60.65	61.44
HORVU2Hr1G057350.2	Barley	cytosol	65.16	61.4
Zm00001d041716_P002	Maize	cytosol	62.26	60.88
GSMUA_Achr7P16680_001	Banana	plasma membrane	72.26	59.89
Zm00001d018867_P002	Maize	plastid	67.1	53.2
Solyc01g006950.2.1	Tomato	nucleus	46.13	47.67
Solyc10g081850.1.1	Tomato	cytosol	45.81	46.86
Solyc12g005580.1.1	Tomato	cytosol	43.87	43.87
Solyc06g053760.2.1	Tomato	cytosol	40.32	40.19
Solyc01g109750.2.1	Tomato	cytosol	30.0	33.21
Solyc02g085090.1.1	Tomato	cytosol	31.94	33.11
TraesCS1A01G088800.1	Wheat	cytosol	30.0	32.4
TraesCS5A01G240200.3	Wheat	mitochondrion	21.94	30.77

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0000149	GO:GO:0003674
GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887	GO:GO:0006906
GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	InterPro:IPR000727	UniProt:K4D345	PFAM:PF00804
PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	SMART:SM00397
SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	EnsemblPlantsGene:Solyc10g081580.1	EnsemblPlants:Solyc10g081580.1.1	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002769A6E	SEG:seg	:

Description

No Description!

Coordinates

chr10:+:62614499..62623102

Molecular Weight (calculated)

35169.3 Da

IEP (calculated)

7.152

GRAVY (calculated)

-0.577

Length

310 amino acids

Sequence
(BLAST)

001: MNDLLNDDDN FDAPRHQSNR NGDVEMGIQI PMNSGELGLD DFFKKVQQIE KQYGRLNELL QKLQDAHEES KAVTKASAMK AIKQRMEKDV DEVGKIARVI
101: KSKIEELDKE NLANRNKPGC GKGSAVDRSR TATTVSLKKK FKDKMAEFQT LRENIHHEYR EVVERRVFTV TGNRADEETI DRLIETGDSE QIFQKAIQQQ
201: GRGQIMGTLA EIQERHDAVR ELERKLLELQ QIFLDIAVLV DAQGDMLDNI ESQVSTAVDH VQSGTTALQK AKKLQKNSRK WMCFAIMILL IIVAIIVVGV
301: LKPWQSNKGA

Best Arabidopsis Sequence Match ( AT3G03800.1 )
(BLAST)

001: MNDLLKGSLE FSRDRSNRSD IESGHGPGNS GDLGLSGFFK KVQEIEKQYE KLDKHLNKLQ GAHEETKAVT KAPAMKSIKQ RMERDVDEVG RISRFIKGKI
101: EELDRENLEN RTKPGCGKGT GVDRTRTATT IAVKKKFKDK ISEFQTLRQN IQQEYREVVE RRVFTVTGQR ADEETVDRLI ETGDSEQIFQ KAIREQGRGQ
201: IMDTLAEIQE RHDAVRDLEK KLLDLQQVFL DMAVLVDAQG EMLDNIENMV SSAVDHVQSG NNQLTKAVKS QKSSRKWMCI AILILLIIII ITVISVLKPW
301: TQKNGA

Arabidopsis Description

SYP131Syntaxin of plants 131 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.