Factsheet for GSMUA_Achr7P16680_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 5
vacuole 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P17410_001	Banana	cytosol	65.24	82.71
Solyc01g056810.2.1	Tomato	cytosol	51.34	75.89
Bra005968.1-P	Field mustard	cytosol	61.5	75.66
Bra009318.1-P	Field mustard	cytosol	60.96	75.25
VIT_08s0032g00440.t01	Wine grape	cytosol	60.96	74.27
Bra028672.1-P	Field mustard	cytosol	59.09	72.94
PGSC0003DMT400072284	Potato	cytosol	60.16	72.58
Solyc10g081580.1.1	Tomato	cytosol, plastid	59.89	72.26
CDY21160	Canola	cytosol	25.67	72.18
CDY51747	Canola	cytosol	25.94	71.85
KRH08507	Soybean	cytosol	59.09	71.75
AT5G08080.3	Thale cress	cytosol	59.63	70.79
GSMUA_Achr2P01540_001	Banana	cytosol	55.88	70.13
CDY50666	Canola	cytosol	24.87	68.89
Os06t0168500-01	Rice	plasma membrane	56.15	68.85
HORVU5Hr1G026120.1	Barley	cytosol	55.88	68.3
AT3G03800.1	Thale cress	cytosol	55.35	67.65
TraesCS5B01G102700.1	Wheat	cytosol	54.55	66.67
TraesCS5A01G096800.1	Wheat	cytosol	54.55	66.67
CDY29963	Canola	cytosol	55.08	66.45
EES16084	Sorghum	cytosol	54.28	66.12
TraesCS5D01G109500.1	Wheat	cytosol	54.01	66.01
KRH70169	Soybean	cytosol	25.67	65.31
Bra031972.1-P	Field mustard	cytosol	48.66	65.0
Zm00001d041716_P002	Maize	cytosol	54.81	64.67
Bra036431.1-P	Field mustard	cytosol	47.59	64.03
CDY51748	Canola	cytosol	29.68	62.71
CDY50665	Canola	cytosol	29.14	62.64
CDY21161	Canola	cytosol	29.41	61.45
GSMUA_Achr10P...	Banana	cytosol	48.66	59.87
GSMUA_Achr9P24850_001	Banana	cytosol	43.32	57.86
GSMUA_Achr6P31140_001	Banana	cytosol	35.83	48.91
GSMUA_Achr10P...	Banana	cytosol	34.49	46.24
GSMUA_Achr6P04820_001	Banana	cytosol	31.02	45.67
GSMUA_Achr1P25170_001	Banana	cytosol	28.88	44.08
GSMUA_Achr8P03020_001	Banana	cytosol	36.1	43.41
GSMUA_Achr10P...	Banana	cytosol	22.73	31.25

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810
GO:GO:0006886	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043
GO:GO:0016192	GO:GO:0061025	EnsemblPlantsGene:GSMUA_Achr7G16680_001	EnsemblPlants:GSMUA_Achr7P16680_001	EnsemblPlants:GSMUA_Achr7T16680_001	InterPro:IPR000727
UniProt:M0TI55	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF153	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000294E6A9	SEG:seg	:

Description

Putative syntaxin-131 [Source:GMGC_GENE;Acc:GSMUA_Achr7G16680_001]

Coordinates

chr7:-:16734935..16743467

Molecular Weight (calculated)

41407.2 Da

IEP (calculated)

9.903

GRAVY (calculated)

-0.365

Length

374 amino acids

Sequence
(BLAST)

001: MAKIPPLPGV PQRRTAGLVG GAAFTSLIPR LDPISDPAVN LLSCRSRVVL RSFAASSPSP RSVIASGRMN NLLSDSFDLP RDEPPRDGDI ESGLQHPKSA
101: AEQGLEGFFK QVEEIEKLIE KLAKLSKNLQ AANEKSKAVT KASDMKAIKQ HMQKDIDEVG KIARLAKSKL EELDRDNLAS RQKPGCGKGS GVDRSRTATT
201: IALKKKLKER MSEFQTLRET IKQEYREVVE RRVFTVTGNR ADEETIDHLI ETGNSEQIFQ KAIQEQGRGQ VMDTLAEIHE RHNTVKDLER KLLELQQIFV
301: DMAVLVDAQG EILDNIESQV SSAVDHVQSG TVALQKAKKL QKNSRKWMCI AIIILLLIVV IIVVAVIKPW SKGG

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.