Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- cytosol 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 85.04 | 77.42 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 28.74 | 70.19 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 70.87 | 59.02 |
| Zm00001d046482_P001 | Maize | cytosol | 71.65 | 58.9 |
| Bra031761.1-P | Field mustard | cytosol | 38.19 | 58.79 |
| EES06503 | Sorghum | cytosol | 72.83 | 58.73 |
| Zm00001d036931_P001 | Maize | cytosol | 71.26 | 58.58 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 70.08 | 58.36 |
| EER89986 | Sorghum | cytosol | 70.87 | 58.25 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 70.47 | 58.12 |
| KRH10761 | Soybean | cytosol | 69.29 | 57.89 |
| KRH41917 | Soybean | cytosol | 69.29 | 57.89 |
| KRH21567 | Soybean | cytosol | 68.9 | 57.57 |
| Os02t0209900-01 | Rice | cytosol | 70.47 | 57.56 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 67.72 | 56.39 |
| AT1G11250.1 | Thale cress | cytosol | 66.14 | 56.38 |
| CDY34843 | Canola | cytosol | 66.14 | 56.38 |
| CDY34656 | Canola | cytosol | 66.14 | 56.38 |
| Bra031759.1-P | Field mustard | cytosol | 66.14 | 56.38 |
| CDY20986 | Canola | cytosol | 65.75 | 56.04 |
| Zm00001d053607_P001 | Maize | cytosol | 68.9 | 55.91 |
| AT1G61290.2 | Thale cress | cytosol | 66.54 | 55.78 |
| Bra019872.1-P | Field mustard | cytosol | 65.35 | 55.7 |
| CDX97943 | Canola | cytosol | 65.35 | 55.7 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 66.93 | 55.56 |
| Bra016846.1-P | Field mustard | cytosol | 64.96 | 55.37 |
| CDY19350 | Canola | cytosol | 64.96 | 55.37 |
| CDY70107 | Canola | cytosol | 64.57 | 55.03 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 65.75 | 54.58 |
| Solyc12g005580.1.1 | Tomato | cytosol | 66.54 | 54.52 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 65.35 | 54.25 |
| PGSC0003DMT400035739 | Potato | cytosol | 66.14 | 54.19 |
| CDY48554 | Canola | cytosol | 64.17 | 53.44 |
| PGSC0003DMT400055777 | Potato | cytosol | 65.35 | 53.38 |
| Bra034202.1-P | Field mustard | cytosol | 63.78 | 53.11 |
| CDY21958 | Canola | cytosol | 63.78 | 53.11 |
| AT4G03330.1 | Thale cress | cytosol | 62.6 | 52.13 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 51.57 | 47.81 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 70.08 | 47.09 |
| GSMUA_Achr1P25170_001 | Banana | cytosol | 42.13 | 43.67 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 51.57 | 42.12 |
| GSMUA_Achr2P01540_001 | Banana | cytosol | 43.31 | 36.91 |
| GSMUA_Achr2P17410_001 | Banana | cytosol | 42.13 | 36.27 |
| GSMUA_Achr10P... | Banana | cytosol | 38.58 | 32.24 |
| GSMUA_Achr7P16680_001 | Banana | plasma membrane | 45.67 | 31.02 |
| GSMUA_Achr9P24850_001 | Banana | cytosol | 33.86 | 30.71 |
| HORVU6Hr1G038490.4 | Barley | nucleus | 37.4 | 30.16 |
| GSMUA_Achr10P... | Banana | cytosol | 31.89 | 29.78 |
| HORVU7Hr1G085550.1 | Barley | cytosol | 35.43 | 28.57 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSMUA_Achr6G04820_001 | EnsemblPlants:GSMUA_Achr6P04820_001 | EnsemblPlants:GSMUA_Achr6T04820_001 | InterPro:IPR000727 |
| UniProt:M0T480 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF198 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00029503EB | SEG:seg | : |
Description
Syntaxin-124 [Source:GMGC_GENE;Acc:GSMUA_Achr6G04820_001]
Coordinates
chr6:+:3272209..3273132
Molecular Weight (calculated)
28468.0 Da
IEP (calculated)
6.518
GRAVY (calculated)
-0.430
Length
254 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLLSTTSF KQYTNLKHQV QMDQMEAGMS GPGADVGANL ERFFEEVENV KNDLRGLESL YRRLQEANEE SKTAHSAKTM KAALDQANAQ HRNIPGCGPG
101: SSADRTRTSV VSGLGKKLKD LMDDFQGLRT RIAAEYKETF MQKAIQEQGR GQVMDTISEI QERHDAVKEI ERSLLDLHQV FLDMAALVEA QGHQLNDIES
201: HVAHASSFVR RGTVELETAR EYQKSSRKWF CIGIIAAALL ITFLLLPVLT TMIR
101: SSADRTRTSV VSGLGKKLKD LMDDFQGLRT RIAAEYKETF MQKAIQEQGR GQVMDTISEI QERHDAVKEI ERSLLDLHQV FLDMAALVEA QGHQLNDIES
201: HVAHASSFVR RGTVELETAR EYQKSSRKWF CIGIIAAALL ITFLLLPVLT TMIR
001: MNDLFSSSFK KYTDLKQQAQ MDDIESGKET MNLDKFFEDV ENVKDNMKGV ETLYKSLQDS NEECKTVHNA KKVKELRAKM DGDVAQVLKR VKMIKQKLEA
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
101: LEKANANSRN VSGCGPGSST DRTRTSVVSG LGKKLKDLMD SFQGLRARMN AEYKETVERR YFTITGEQAD EQTIENLISS GESENFLQKA IQEQGRGQIL
201: DTISEIQERH DAVKEIEKNL IELHQVFLDM AALVESQGQQ LNDIESHVSK ASSFVRRGTD QLQDAREYQK SSRKWTCYAI LLFIVVFALL LIPALPHIML
301: MLK
Arabidopsis Description
SYP124Syntaxin-124 [Source:UniProtKB/Swiss-Prot;Acc:O64791]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.