Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G085550.1 | Barley | cytosol | 68.25 | 68.25 |
| TraesCS6D01G169800.1 | Wheat | cytosol | 47.94 | 49.51 |
| TraesCS6B01G211000.1 | Wheat | cytosol | 47.62 | 49.18 |
| Zm00001d053607_P001 | Maize | cytosol | 41.9 | 42.17 |
| EES06503 | Sorghum | cytosol | 41.9 | 41.9 |
| Os02t0209900-01 | Rice | cytosol | 41.27 | 41.8 |
| Zm00001d036931_P001 | Maize | cytosol | 39.37 | 40.13 |
| Zm00001d046482_P001 | Maize | cytosol | 39.37 | 40.13 |
| EER89986 | Sorghum | cytosol | 39.37 | 40.13 |
| TraesCS6A01G182200.1 | Wheat | cytosol | 47.3 | 39.42 |
| KRH21567 | Soybean | cytosol | 36.51 | 37.83 |
| KRH10761 | Soybean | cytosol | 36.19 | 37.5 |
| GSMUA_Achr6P04820_001 | Banana | cytosol | 30.16 | 37.4 |
| VIT_00s0404g00100.t01 | Wine grape | cytosol | 36.51 | 37.34 |
| TraesCS7B01G260100.1 | Wheat | cytosol | 36.19 | 37.25 |
| TraesCS7A01G368400.1 | Wheat | cytosol | 36.19 | 37.25 |
| AT1G11250.1 | Thale cress | cytosol | 35.24 | 37.25 |
| KRH41917 | Soybean | cytosol | 35.87 | 37.17 |
| AT1G61290.2 | Thale cress | cytosol | 35.56 | 36.96 |
| Bra031759.1-P | Field mustard | cytosol | 34.92 | 36.91 |
| CDY34656 | Canola | cytosol | 34.92 | 36.91 |
| CDY34843 | Canola | cytosol | 34.92 | 36.91 |
| TraesCS7D01G354500.1 | Wheat | cytosol | 35.56 | 36.6 |
| Bra016846.1-P | Field mustard | cytosol | 34.6 | 36.58 |
| CDY20986 | Canola | cytosol | 34.6 | 36.58 |
| CDY70107 | Canola | cytosol | 34.29 | 36.24 |
| Bra019872.1-P | Field mustard | cytosol | 33.97 | 35.91 |
| CDX97943 | Canola | cytosol | 33.97 | 35.91 |
| CDY19350 | Canola | cytosol | 33.97 | 35.91 |
| CDY48554 | Canola | cytosol | 34.29 | 35.41 |
| Solyc12g005580.1.1 | Tomato | cytosol | 34.6 | 35.16 |
| PGSC0003DMT400035739 | Potato | cytosol | 34.6 | 35.16 |
| VIT_12s0059g02060.t01 | Wine grape | cytosol | 33.97 | 35.08 |
| Bra034202.1-P | Field mustard | cytosol | 33.97 | 35.08 |
| CDY21958 | Canola | cytosol | 33.97 | 35.08 |
| AT4G03330.1 | Thale cress | cytosol | 33.65 | 34.75 |
| PGSC0003DMT400055777 | Potato | cytosol | 33.97 | 34.41 |
| GSMUA_Achr10P... | Banana | cytosol | 30.16 | 34.05 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 15.24 | 30.97 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 18.1 | 22.35 |
| HORVU5Hr1G026120.1 | Barley | cytosol | 21.59 | 22.22 |
| HORVU4Hr1G011180.2 | Barley | cytosol | 25.4 | 22.04 |
| HORVU6Hr1G095330.1 | Barley | cytosol | 20.32 | 21.26 |
| HORVU2Hr1G057350.2 | Barley | cytosol | 21.27 | 20.36 |
| HORVU2Hr1G045350.3 | Barley | cytosol | 18.41 | 19.8 |
| HORVU6Hr1G028850.1 | Barley | cytosol | 15.56 | 16.01 |
| Bra031761.1-P | Field mustard | cytosol | 6.98 | 13.33 |
| HORVU2Hr1G043130.15 | Barley | cytosol | 13.02 | 13.06 |
| Bra031760.1-P | Field mustard | cytosol, nucleus, plasma membrane | 3.17 | 9.62 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G038490.4 | EnsemblPlantsGene:HORVU6Hr1G038490 | Gene3D:1.20.58.70 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016192 | InterPro:SNARE | InterPro:Syntaxin_N | ncoils:Coil | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF198 | PFAM:PF00804 | SEG:seg | SMART:SM00503 | SUPFAM:SSF47661 | UniParc:UPI000B46DD68 |
| UniProt:A0A287TYY2 | MapMan:22.7.1.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:196539378..196540935
Molecular Weight (calculated)
33567.1 Da
IEP (calculated)
10.594
GRAVY (calculated)
-0.979
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSSF KKYADLKEQV ALDEMEAGGE GTNLDKFFED VEGVKEDIRG LEAIYRRLQS VNEESKTAHD ARAVKSLRAR MDGDVEQVLR RAKVVKAKLE
101: ALDRANAASR KLPGCGAGSS TDRTRSSVVS GLGNKLKDLM DDFQGPSDAD GGGVQGDGSA AVLHGDGGDG GGEHDRGAHL VGGERDVPAE GDPAGPRARG
201: GDGHGVGDPG AARRRQGHRA QPAGAAPGVP GHGGAGGGAG PPTQQHRDPR RARQLLRGQG HRGARVRARL PEEQPQVGLH RRRRRRRARA RHRAPDTRQP
301: QALERQIDAL QHDAR
101: ALDRANAASR KLPGCGAGSS TDRTRSSVVS GLGNKLKDLM DDFQGPSDAD GGGVQGDGSA AVLHGDGGDG GGEHDRGAHL VGGERDVPAE GDPAGPRARG
201: GDGHGVGDPG AARRRQGHRA QPAGAAPGVP GHGGAGGGAG PPTQQHRDPR RARQLLRGQG HRGARVRARL PEEQPQVGLH RRRRRRRARA RHRAPDTRQP
301: QALERQIDAL QHDAR
001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
Arabidopsis Description
SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.