Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G286100.3 | Wheat | golgi | 85.45 | 93.61 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 88.47 | 92.96 |
| TraesCS6B01G314800.3 | Wheat | plastid | 90.13 | 92.26 |
| Os02t0722800-01 | Rice | plasma membrane | 72.77 | 75.43 |
| EES05610 | Sorghum | plastid | 72.12 | 74.87 |
| Zm00001d017883_P002 | Maize | plastid | 69.74 | 70.86 |
| Zm00001d051678_P001 | Maize | cytosol | 68.37 | 68.42 |
| HORVU7Hr1G045240.3 | Barley | plastid | 36.74 | 63.59 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 48.56 | 56.45 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 47.26 | 53.81 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 50.0 | 52.22 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 45.97 | 52.17 |
| Solyc03g071660.1.1 | Tomato | cytosol | 6.99 | 51.87 |
| Zm00001d008821_P001 | Maize | extracellular | 5.19 | 50.7 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.24 | 50.56 |
| VIT_00s2472g00010.t01 | Wine grape | cytosol, peroxisome | 5.48 | 49.67 |
| Solyc07g021140.1.1 | Tomato | cytosol | 4.68 | 49.62 |
| KRH63269 | Soybean | cytosol | 5.69 | 49.38 |
| Solyc11g032180.1.1 | Tomato | cytosol | 3.24 | 48.91 |
| VIT_00s0455g00020.t01 | Wine grape | plastid | 47.84 | 48.36 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 47.26 | 46.82 |
| VIT_00s1618g00010.t01 | Wine grape | cytosol | 13.04 | 46.65 |
| KRH46493 | Soybean | plastid | 44.88 | 46.29 |
| Zm00001d048003_P001 | Maize | extracellular | 5.62 | 45.88 |
| KRG98417 | Soybean | cytosol | 36.67 | 45.61 |
| CDY44010 | Canola | plastid | 40.71 | 45.6 |
| CDY23587 | Canola | plastid | 41.5 | 44.65 |
| CDY23580 | Canola | plastid | 38.76 | 44.5 |
| KRH11647 | Soybean | endoplasmic reticulum | 44.81 | 44.27 |
| Bra034693.1-P | Field mustard | cytosol | 36.74 | 44.23 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 41.93 | 43.76 |
| KRH36660 | Soybean | endoplasmic reticulum | 44.31 | 43.71 |
| AT3G13300.1 | Thale cress | cytosol | 42.22 | 43.6 |
| AT3G13290.1 | Thale cress | cytosol | 42.07 | 43.58 |
| Solyc07g065950.2.1 | Tomato | plastid | 43.73 | 43.14 |
| CDY44011 | Canola | plastid | 39.55 | 42.76 |
| Zm00001d002560_P001 | Maize | mitochondrion | 14.63 | 42.65 |
| Solyc10g005920.2.1 | Tomato | plastid | 43.52 | 42.6 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.11 | 41.3 |
| KRH46495 | Soybean | cytosol | 18.23 | 41.07 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 3.6 | 40.98 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.03 | 40.38 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 9.37 | 39.76 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 5.33 | 28.35 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | UniProt:A0A287UM58 | ncoils:Coil | InterPro:EDC4_WD40 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:HORVU6Hr1G071910 | EnsemblPlants:HORVU6Hr1G071910.3 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF16529 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 |
| PANTHER:PTHR15598:SF6 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000B464F73 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:499742298..499751641
Molecular Weight (calculated)
150542.0 Da
IEP (calculated)
6.228
GRAVY (calculated)
-0.359
Length
1388 amino acids
Sequence
(BLAST)
(BLAST)
0001: RNSEGAKARE NNRRLPPRPA LLVFRSAAPP THPLSHPHFP PRSTPLPPPM ASPAGNPNPN PGNPNPPFEM AMLFRPPPNP APTAAPMFPG AAGPPPPSGP
0101: YSYPPATPPF HLRPYLHYPQ DPQPPMPRPV IPFPMPNPNA NPNPSANPMA AAGANPGARL MQLLGSSGSG HLESAVSMPP PSSEFAAAQP SPLPAMPSAP
0201: PARMLSSTSS KVPRGRLLGG GDKAVHNVDS RLPGEAQPPQ LEVTPITKYT SDPGLVLGRQ IAVNRTYIVY GLKLGNIRVL NINTALRSLL RGHTQRVTDM
0301: AFFAEDVHRL ASASVDGRIY VWRIDEGPDA ENKPQITGKI EVAIQIVGDA EAYHPRICWH SHKQELLFVG IRNCVLRIDT TKVGRGRDFT AEEPIKCHLD
0401: DLIDGVRLVG RHDGDVTDLS ISQWMTTRLA SGSNDGTVKI WDDRKLAPLS ILKPHDGQAV YSVAFLTAPE RPHHINLITA GPLNREIKIW ASTNEEGWLL
0501: PSDSESWNCT QTLELVSSLE PKVEEAFFNQ VAVLPQASII LLANAKKNAI YAVHVEYGSD PASTRLDYIA DFTVAMPILS LTGTHESQPD GEQVVQVYCV
0601: QTMAIQQYGL ELSLCSPPTS DTIALGRDPA ISRVYDTPLE VVGAESSTGT SFTDSSKQST FDQTSEFDLK PSAPPLAYTE GDGSAHLPSA PLASNTDLTG
0701: SGPSVGNRDK DQSVFDYSTS RITEPVALTR QDTPMPKPLA LARQDTPMPK DNFGKGELRD SHSDVQMLPN PRMMFKVGGN ATHLITPSEI ISGALSAESN
0801: QISKSDGAKI QDDSISSPRI AEVEAKHVDE IKSDLELEAV KEAQVVHENS EKAQNSLEQT VEMISERSVT TDKYSVEESR SPSGRLVPDH TGAAGENVQN
0901: KTVEKPGTSD YSSSSVSKEQ SSSYTKENVF HPQASGQSSP STSAFNSTES SHEPVSSAYP PIESSSEVAD MLQQLIAMQK DMHKQLGTIV SAPIAKEGKR
1001: IETSLGRTME KSIKASIDAL WARFLEENTK REKAERERMQ QMTTLITNSI SKDLPAMLDK LVKREVSSLG PIVARAMTPI IEKSLTSIVA DSVQKAVGDK
1101: VVNQLDKSVT AKLEATLARQ IQMQFHTSVK QTLQDVLRTS FESLLVPAFE QSCKTMFEQV DSAFQKGMSE HAVAIQQQVE AAHTPLVLTL KETIASASSI
1201: SQNLTSELLD GHRKLLALVT SGNANAQNTN VSQPNNGPIT GPPEVEAPLD PMKELGRLLS EHKFDEAFTV ALQRSDVSIV SWLCSQVDLR GLCTMAPVPL
1301: NQGVLLALLQ QLAVDIGTET SRKIQWMTDV AMAINPTDQV IAIHVRPIFE QVYAKLAHHR SLPTTSPLDN SNLRLLMHVI NSVLLSYK
0101: YSYPPATPPF HLRPYLHYPQ DPQPPMPRPV IPFPMPNPNA NPNPSANPMA AAGANPGARL MQLLGSSGSG HLESAVSMPP PSSEFAAAQP SPLPAMPSAP
0201: PARMLSSTSS KVPRGRLLGG GDKAVHNVDS RLPGEAQPPQ LEVTPITKYT SDPGLVLGRQ IAVNRTYIVY GLKLGNIRVL NINTALRSLL RGHTQRVTDM
0301: AFFAEDVHRL ASASVDGRIY VWRIDEGPDA ENKPQITGKI EVAIQIVGDA EAYHPRICWH SHKQELLFVG IRNCVLRIDT TKVGRGRDFT AEEPIKCHLD
0401: DLIDGVRLVG RHDGDVTDLS ISQWMTTRLA SGSNDGTVKI WDDRKLAPLS ILKPHDGQAV YSVAFLTAPE RPHHINLITA GPLNREIKIW ASTNEEGWLL
0501: PSDSESWNCT QTLELVSSLE PKVEEAFFNQ VAVLPQASII LLANAKKNAI YAVHVEYGSD PASTRLDYIA DFTVAMPILS LTGTHESQPD GEQVVQVYCV
0601: QTMAIQQYGL ELSLCSPPTS DTIALGRDPA ISRVYDTPLE VVGAESSTGT SFTDSSKQST FDQTSEFDLK PSAPPLAYTE GDGSAHLPSA PLASNTDLTG
0701: SGPSVGNRDK DQSVFDYSTS RITEPVALTR QDTPMPKPLA LARQDTPMPK DNFGKGELRD SHSDVQMLPN PRMMFKVGGN ATHLITPSEI ISGALSAESN
0801: QISKSDGAKI QDDSISSPRI AEVEAKHVDE IKSDLELEAV KEAQVVHENS EKAQNSLEQT VEMISERSVT TDKYSVEESR SPSGRLVPDH TGAAGENVQN
0901: KTVEKPGTSD YSSSSVSKEQ SSSYTKENVF HPQASGQSSP STSAFNSTES SHEPVSSAYP PIESSSEVAD MLQQLIAMQK DMHKQLGTIV SAPIAKEGKR
1001: IETSLGRTME KSIKASIDAL WARFLEENTK REKAERERMQ QMTTLITNSI SKDLPAMLDK LVKREVSSLG PIVARAMTPI IEKSLTSIVA DSVQKAVGDK
1101: VVNQLDKSVT AKLEATLARQ IQMQFHTSVK QTLQDVLRTS FESLLVPAFE QSCKTMFEQV DSAFQKGMSE HAVAIQQQVE AAHTPLVLTL KETIASASSI
1201: SQNLTSELLD GHRKLLALVT SGNANAQNTN VSQPNNGPIT GPPEVEAPLD PMKELGRLLS EHKFDEAFTV ALQRSDVSIV SWLCSQVDLR GLCTMAPVPL
1301: NQGVLLALLQ QLAVDIGTET SRKIQWMTDV AMAINPTDQV IAIHVRPIFE QVYAKLAHHR SLPTTSPLDN SNLRLLMHVI NSVLLSYK
0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.