Factsheet for Solyc09g055300.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g032180.1.1	Tomato	cytosol	40.45	39.13
Solyc03g071660.1.1	Tomato	cytosol	68.54	32.62
Solyc02g005370.1.1	Tomato	cytosol	38.2	24.64
Solyc07g021140.1.1	Tomato	cytosol	30.34	20.61
Solyc12g062490.1.1	Tomato	nucleus, plastid	25.84	18.85
Solyc11g039850.1.1	Tomato	cytosol	17.98	15.38
VIT_03s0091g01220.t01	Wine grape	cytosol	52.81	14.37
Solyc07g065950.2.1	Tomato	plastid	68.54	4.34
KRG98417	Soybean	cytosol	53.93	4.3
CDY44010	Canola	plastid	55.06	3.95
GSMUA_Achr3P04200_001	Banana	plastid	52.81	3.86
CDY23587	Canola	plastid	55.06	3.8
AT3G13300.1	Thale cress	cytosol	57.3	3.79
Zm00001d002560_P001	Maize	mitochondrion	20.22	3.78
GSMUA_Achr3P10880_001	Banana	plastid	50.56	3.77
Solyc10g005920.2.1	Tomato	plastid	59.55	3.74
Bra034693.1-P	Field mustard	cytosol	48.31	3.73
CDY23580	Canola	plastid	49.44	3.64
Bra034692.1-P	Field mustard	cytosol, plastid	53.93	3.61
AT3G13290.1	Thale cress	cytosol	53.93	3.58
VIT_19s0015g01380.t01	Wine grape	plastid	56.18	3.57
TraesCS6A01G286100.3	Wheat	golgi	50.56	3.55
GSMUA_Achr5P04250_001	Banana	plastid	48.31	3.52
KRH46493	Soybean	plastid	52.81	3.49
Os02t0722800-01	Rice	plasma membrane	51.69	3.44
TraesCS6D01G266500.2	Wheat	cytosol, plastid	50.56	3.41
GSMUA_Achr9P19760_001	Banana	plastid	50.56	3.39
CDY44011	Canola	plastid	48.31	3.35
TraesCS6B01G314800.3	Wheat	plastid	50.56	3.32
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	50.56	3.24
EES05610	Sorghum	plastid	48.31	3.22
Os06t0300800-01	Rice	plasma membrane	47.19	3.15
TraesCS7D01G221700.1	Wheat	plastid	44.94	3.12
TraesCS7A01G220400.4	Wheat	plastid	44.94	3.06
TraesCS7B01G127000.4	Wheat	plastid	44.94	3.06
Zm00001d017883_P002	Maize	plastid	46.07	3.0
Zm00001d051678_P001	Maize	cytosol	46.07	2.96
Zm00001d048003_P001	Maize	extracellular	4.49	2.35
VIT_03s0091g01230.t01	Wine grape	nucleus	2.25	0.77
Zm00001d008821_P001	Maize	extracellular	1.12	0.7
HORVU7Hr1G045240.3	Barley	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc09g055300.1.1	EnsemblPlantsGene:Solyc09g055300.1	GO:GO:0000932	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0031087	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	UniParc:UPI000276AF42	UniProt:K4CT27	MapMan:35.1

Description

No Description!

Coordinates

chr9:-:38969140..38970760

Molecular Weight (calculated)

10288.3 Da

IEP (calculated)

4.717

GRAVY (calculated)

-0.182

Length

89 amino acids

Sequence
(BLAST)

1: MTSTFQVVNQ LEKSLNSIRE ATIARQIQEQ FQTSGKQTLQ ETQEYTLEVL VIPSFEMSFK AMFEKVNSIF QKVIAEHTIV AQQQFESLL

Best Arabidopsis Sequence Match ( AT3G13300.3 )
(BLAST)

0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVCTSLEL ITNHKSCFCL VHEHFSYSWW LFAA

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.