Factsheet for Solyc10g005920.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065950.2.1	Tomato	plastid	71.86	72.42
Solyc03g071660.1.1	Tomato	cytosol	9.17	69.52
Solyc07g021140.1.1	Tomato	cytosol	5.85	63.36
VIT_19s0015g01380.t01	Wine grape	plastid	61.07	61.81
KRH46493	Soybean	plastid	56.7	59.73
Solyc09g055300.1.1	Tomato	cytosol	3.74	59.55
KRG98417	Soybean	cytosol	46.47	59.05
Solyc11g032180.1.1	Tomato	cytosol	3.81	58.7
Zm00001d008821_P001	Maize	extracellular	5.78	57.75
Solyc12g062490.1.1	Tomato	nucleus, plastid	4.94	57.38
Solyc02g005370.1.1	Tomato	cytosol	5.43	55.8
Solyc11g039850.1.1	Tomato	cytosol	4.09	55.77
CDY44010	Canola	plastid	47.95	54.88
AT3G13300.1	Thale cress	cytosol	51.9	54.76
GSMUA_Achr3P10880_001	Banana	plastid	45.7	54.27
GSMUA_Achr5P04250_001	Banana	plastid	46.33	53.72
Bra034693.1-P	Field mustard	cytosol	43.65	53.69
CDY23587	Canola	plastid	48.59	53.41
CDY23580	Canola	plastid	45.13	52.94
Bra034692.1-P	Field mustard	cytosol, plastid	49.65	52.93
AT3G13290.1	Thale cress	cytosol	49.15	52.01
GSMUA_Achr3P04200_001	Banana	plastid	44.71	52.01
Zm00001d048003_P001	Maize	extracellular	6.21	51.76
CDY44011	Canola	plastid	46.54	51.4
GSMUA_Achr9P19760_001	Banana	plastid	47.39	50.56
VIT_03s0091g01220.t01	Wine grape	cytosol	11.5	49.85
TraesCS7B01G127000.4	Wheat	plastid	43.51	47.17
TraesCS7D01G221700.1	Wheat	plastid	42.6	47.11
Os06t0300800-01	Rice	plasma membrane	44.29	47.08
TraesCS7A01G220400.4	Wheat	plastid	43.3	46.98
Os02t0722800-01	Rice	plasma membrane	44.08	46.68
EES05610	Sorghum	plastid	43.86	46.52
TraesCS6A01G286100.3	Wheat	golgi	41.04	45.94
Zm00001d017883_P002	Maize	plastid	43.86	45.53
HORVU7Hr1G045240.3	Barley	plastid	25.53	45.14
TraesCS6D01G266500.2	Wheat	cytosol, plastid	41.68	44.74
TraesCS6B01G314800.3	Wheat	plastid	42.31	44.25
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	42.6	43.52
Zm00001d051678_P001	Maize	cytosol	41.11	42.03
VIT_03s0091g01230.t01	Wine grape	nucleus	7.55	41.0
Zm00001d002560_P001	Maize	mitochondrion	12.84	38.24

Protein Annotations

Gene3D:1.10.220.100	MapMan:16.8.2.2.4	Gene3D:2.130.10.10	InterPro:EDC4_WD40	GO:GO:0000932	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0031087
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CXC4	PFAM:PF16529	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:Solyc10g005920.2
EnsemblPlants:Solyc10g005920.2.1	UniParc:UPI000276CB77	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr10:+:709875..721808

Molecular Weight (calculated)

153942.0 Da

IEP (calculated)

6.209

GRAVY (calculated)

-0.338

Length

1418 amino acids

Sequence
(BLAST)

0001: MASAGNPNQS GGTPSDMHTF FKPSTLVSTN PNTQNPINPN LIPSPFPLAS ASYPPASAGG AGGGTGGSAG GLYYPTQTTP FHLIPQFNHN IPLQYNNHQP
0101: QHDGHMHPQR SMSFPAPPLQ PPPTPTSPHQ FLNPGNNPNP NPGARLMALL SPPSSTHEVL QQPTVQLPPL QPTTSGSELS DFSASPNVGI AHSGSSPLRM
0201: PSRKLPKGRH LNGDHVVYDI DDRLPGEVQP QLEVTPITKY GSDPGLVLGR QIAVNKSYIC YGLKLGAIRV LNINTALRSL LKGLAQRVTD MAFFAEDVHL
0301: LASASVDGRV YIWKITEGPD EEDKPQITGR IVTAIQIVGE GESLHPRVCW HCHKQEILVV GIGRHVLKID TTKFGKAEVF SADEPLKCPV DRLVDGVQLV
0401: GAHDGEVTDL SMCQWMTTRL VSASVDGTIK IWEDWKPQPI AILRPHDGNP IHSATFLSAP DCPHHIILIT GGLLNREMKI WVSASESWHC IQTLELKSSA
0501: EARAEETFFN QVVALSQAGL LLLANAKKNA IYAVHLEYGL NPMATHMDYI AEFTVTMPIL SFTGTSDLQP HGEQIVQVYC VQTQAIQQYA LDLSQCLPPP
0601: MENGVGFERT ESNVSRDAAN IEGYVPVDPP GSKQMDFPLT SSAPKTLVNE SATEIEATAR PLMTDARTAL ATSAEFASSI AESKSSSLPS ITTDTDIAPF
0701: TSPPPLSPEL ARKLSGFRSI SNSSKHGPSV NDHFGDPKAV EYSVDRQMDA IHPNLTGLTL SDGDPMKNED EVSGDDGSSG ISSTIKFKHP THLVTPSEIL
0801: MANSSSEVNH VNEHKSEGQS SIQDVVINKE ARNVEAEVKN VGETRFNQKT DVGSQQELHT FVSDNKEKPF CSQASDLGIE MARECRDLSP ETYIVEESRQ
0901: FDGVSGTEQL IQASTAPKED RDSAKETSGN NLDSNVQVSA HQPPASSAKG KKQKAKNTQG FEPASPSPGS FKSSDSNEGG ISSSNTSMEA AVSQILSMRE
1001: KLNQVLNMQK ETQKQMSVMV AAPVTKEGRR LEAALGQSME KAVKANYDAL WARYHEDSAK QEKLLRDRTQ QITNLISNCF NKDMPGLIEK IMKKELAAVG
1101: QAVTRSIVPI IEKTVSTAIS ESFQKGVSDK AVNQLEKTVS SKLEASVARQ IQAQFQTSGK QALQETLKSI MEGSVIPGFE MSCKAMFEQV DLTFQKGFAE
1201: HTGSALQQFE SMHSPLVHAL RDAINSASSM TQTLSGELAD GQKKLLTLAV SGANSKLSNP LVSHMSNGPL LHEKLEAPVD PIKELSRLLA ERKYEEAFTT
1301: ALHRTDVSIV SWLCLQVDLS GILSMNPLPL SQGVLLSLLQ QVACDITNET SRKLSWMRDV VSAINPTDPV IVLHVRPIFE QVYQILNHHR TLPTTTPAEL
1401: SSIRLIMHVI NSMLHVPC

Best Arabidopsis Sequence Match ( AT3G13300.2 )
(BLAST)

0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.