Factsheet for Solyc12g062490.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g021140.1.1	Tomato	cytosol	83.61	77.86
Solyc11g039850.1.1	Tomato	cytosol	56.56	66.35
Solyc02g005370.1.1	Tomato	cytosol	59.02	52.17
Solyc03g071660.1.1	Tomato	cytosol	71.31	46.52
Solyc11g032180.1.1	Tomato	cytosol	23.77	31.52
Solyc09g055300.1.1	Tomato	cytosol	18.85	25.84
Zm00001d002560_P001	Maize	mitochondrion	39.34	10.08
VIT_03s0091g01220.t01	Wine grape	cytosol	26.23	9.79
Solyc07g065950.2.1	Tomato	plastid	77.87	6.75
KRG98417	Soybean	cytosol	47.54	5.2
Solyc10g005920.2.1	Tomato	plastid	57.38	4.94
VIT_19s0015g01380.t01	Wine grape	plastid	55.74	4.85
CDY44010	Canola	plastid	45.9	4.52
GSMUA_Achr3P10880_001	Banana	plastid	43.44	4.44
GSMUA_Achr5P04250_001	Banana	plastid	44.26	4.42
KRH46493	Soybean	plastid	48.36	4.38
AT3G13300.1	Thale cress	cytosol	47.54	4.32
CDY23587	Canola	plastid	45.08	4.26
Bra034692.1-P	Field mustard	cytosol, plastid	45.9	4.21
GSMUA_Achr3P04200_001	Banana	plastid	41.8	4.18
AT3G13290.1	Thale cress	cytosol	45.08	4.1
TraesCS7D01G221700.1	Wheat	plastid	42.62	4.06
Bra034693.1-P	Field mustard	cytosol	37.7	3.99
TraesCS7A01G220400.4	Wheat	plastid	42.62	3.98
TraesCS7B01G127000.4	Wheat	plastid	42.62	3.98
CDY23580	Canola	plastid	39.34	3.97
TraesCS6A01G286100.3	Wheat	golgi	40.98	3.95
TraesCS6D01G266500.2	Wheat	cytosol, plastid	41.8	3.86
TraesCS6B01G314800.3	Wheat	plastid	42.62	3.83
GSMUA_Achr9P19760_001	Banana	plastid	40.98	3.76
Os02t0722800-01	Rice	plasma membrane	40.98	3.73
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	40.98	3.6
Os06t0300800-01	Rice	plasma membrane	39.34	3.6
EES05610	Sorghum	plastid	39.34	3.59
CDY44011	Canola	plastid	37.7	3.58
Zm00001d017883_P002	Maize	plastid	39.34	3.51
Zm00001d051678_P001	Maize	cytosol	39.34	3.46
Zm00001d048003_P001	Maize	extracellular	3.28	2.35
Zm00001d008821_P001	Maize	extracellular	1.64	1.41
VIT_03s0091g01230.t01	Wine grape	nucleus	1.64	0.77
HORVU7Hr1G045240.3	Barley	plastid	2.46	0.37

Protein Annotations

EnsemblPlants:Solyc12g062490.1.1	EnsemblPlantsGene:Solyc12g062490.1	GO:GO:0000932	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0031087	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	SEG:seg	UniParc:UPI000276A37F	UniProt:K4DG75
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:+:33429585..33429953

Molecular Weight (calculated)

13606.2 Da

IEP (calculated)

9.825

GRAVY (calculated)

-0.599

Length

122 amino acids

Sequence
(BLAST)

001: MSCKAMFEQV NSIFQKGIAD HRVAAQQKFE SVHSPLASAL RDSINSASVM TQTLSREFAD SLRQLLALGV SGENSQSTNP LNNMNNGSLL HEKIETLPNP
101: TKDISKQLGE YKYKKHSLKH YK

Best Arabidopsis Sequence Match ( AT3G13300.2 )
(BLAST)

0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.