Factsheet for Zm00001d002560_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008821_P001	Maize	extracellular	25.21	84.51
Zm00001d048003_P001	Maize	extracellular	24.79	69.41
VIT_00s2472g00010.t01	Wine grape	cytosol, peroxisome	21.22	66.01
Solyc07g021140.1.1	Tomato	cytosol	12.82	46.56
Solyc11g039850.1.1	Tomato	cytosol	9.03	41.35
Solyc12g062490.1.1	Tomato	nucleus, plastid	10.08	39.34
Solyc03g071660.1.1	Tomato	cytosol	13.87	35.29
Solyc11g032180.1.1	Tomato	cytosol	5.88	30.43
Solyc02g005370.1.1	Tomato	cytosol	8.19	28.26
KRH63269	Soybean	cytosol	8.4	25.0
EES05610	Sorghum	plastid	56.93	20.27
Solyc09g055300.1.1	Tomato	cytosol	3.78	20.22
Zm00001d017883_P002	Maize	plastid	56.09	19.55
GSMUA_Achr3P10880_001	Banana	plastid	45.17	18.01
Os02t0722800-01	Rice	plasma membrane	49.58	17.63
Zm00001d051678_P001	Maize	cytosol	50.84	17.45
GSMUA_Achr5P04250_001	Banana	plastid	43.91	17.09
GSMUA_Achr3P04200_001	Banana	plastid	43.07	16.82
TraesCS6A01G286100.3	Wheat	golgi	42.86	16.1
KRG98417	Soybean	cytosol	36.76	15.68
TraesCS6D01G266500.2	Wheat	cytosol, plastid	43.07	15.52
CDY44010	Canola	plastid	39.71	15.25
TraesCS6B01G314800.3	Wheat	plastid	43.07	15.12
Bra034693.1-P	Field mustard	cytosol	36.34	15.0
GSMUA_Achr9P19760_001	Banana	plastid	41.6	14.9
CDY23580	Canola	plastid	37.4	14.72
CDY23587	Canola	plastid	39.71	14.65
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	42.65	14.63
KRH46493	Soybean	plastid	40.55	14.34
Bra034692.1-P	Field mustard	cytosol, plastid	39.71	14.21
VIT_00s0455g00020.t01	Wine grape	plastid	40.76	14.13
AT3G13300.1	Thale cress	cytosol	39.5	13.99
VIT_19s0015g01380.t01	Wine grape	plastid	40.76	13.85
AT3G13290.1	Thale cress	cytosol	38.45	13.66
CDY44011	Canola	plastid	36.55	13.55
KRH11647	Soybean	endoplasmic reticulum	39.71	13.45
KRH36660	Soybean	endoplasmic reticulum	39.08	13.22
Solyc10g005920.2.1	Tomato	plastid	38.24	12.84
VIT_03s0091g01220.t01	Wine grape	cytosol	8.4	12.23
Solyc07g065950.2.1	Tomato	plastid	34.45	11.66
KRH46495	Soybean	cytosol	10.08	7.79
VIT_00s1618g00010.t01	Wine grape	cytosol	2.52	3.09
VIT_03s0091g01230.t01	Wine grape	nucleus	1.05	1.92

Protein Annotations

EnsemblPlants:Zm00001d002560_P001	EnsemblPlants:Zm00001d002560_T001	EnsemblPlantsGene:Zm00001d002560	Gene3D:1.10.220.100	PANTHER:PTHR15598	PANTHER:PTHR15598:SF6
ProteinID:ONM14666.1	SEG:seg	UniParc:UPI0002211123	UniProt:A0A1D6E1X6	MapMan:35.1	:

Description

Enhancer of mRNA-decapping protein 4

Coordinates

chr2:-:15366760..15371345

Molecular Weight (calculated)

52198.4 Da

IEP (calculated)

6.763

GRAVY (calculated)

-0.061

Length

476 amino acids

Sequence
(BLAST)

001: MILNRLHVRV IRRSPASAAL RDAATRALAS AGLFRGLHGG EAGDGASSEH GREPADEPGK QVRSAVRIKN ISKSHVAFKQ DYFSEGLYTF DIGQNDLAGE
101: FYSRTEDQVI VSIPTILLEF ENGLKAVISS RRLSNYLSTP EHHSSELNAS ADLLNHHFKR YTKVTHNPMA IVFQNVSCSW SSSSVAELNI VLRDISLQLQ
201: KGLFIAIVGE VFLESYVVGV HNFVNGLFGT NLSFSPSFEQ ACKTMFEQVD GAFQKGMSEH SNAIQQQVEA AHTPLALTLK ETINSASSIT QSFSSELLDG
301: NRKLLALVTS GNAKAHNTSA LQPINGPMGG PQEVEAPLDP MRELSRLISE RKFDEAFTMA LQRSDVSIVS WLCSQVDLRA LCAMVPVPLN QGVLLALLQQ
401: LAIDIHNETS RKVQWMTDVA MAINPADQII PVHVPPIFEQ VYSQLAHQRT LPTTASDGTS IRVIMHVINS VLLSYK

Best Arabidopsis Sequence Match ( AT3G13290.1 )
(BLAST)

0001: MASSPGNTNP HNPPPFDLGT IFKPSSNPYP PPTGPFLNNQ YNQQLYAPPG IAAQPSPVNQ TQQDVSSSSS ATNLQPQRTL SYPTPPLNPQ SPRVNHNPGT
0101: HILALLNNGG AVANQEPSHH NEIARAFPGG SGPIHVPSGK MPKGRRLVGE HAVYDVDVRL QGEIQPQLEV TPITKYGSDP QLVLGRQIAV NKVYICYGLK
0201: GGSIRVLNIN TALRSLFRGH SQRVTDMAFF AEDVHLLASV SLDGKVFVWK ISEGSEGDEQ SQITGKIVVA LQILGEEDTK HPRVCWHCHK QEILVVSIGK
0301: HVLRIDTTKV GRGEVFSAEA PLQCHLDKLI DGVQIVGKHD GEVTDLSMCQ WMTTRLVSSS VDGTVKIWQD RKTQPLVVLR PHDGLPVNSA IFVTSPERPD
0401: HIILITGGPL NREIKIWVSA GEEGWLLPAD TESWRCTQTL DLKSSTEPQA EKAFFNQVIA LSEAGLLLLA NARRNAIYSV HLDYGSSPVE TLMDYLSEFT
0501: VTMPILSFIG TNDHPEEPFV KVYCVQTLAI QQYTLDLFLC MPPPRENVGF EKSDSTVSRE ANLVESTLET SGMKPTELPS VGSVPKPSIL VNRSENANML
0601: SFPAGPASAG ITPPAIVPPN GEPKTSGMPS ETSDVDSAYA PSPQLPLSPR LSSKLSGYHT PVEAFEQVLP HHKLGGKTSS ADYFYVRQTD DVGGRNLDVS
0701: SVEENCRSKD TNVTPDDDVS GIRSPSAFFK QPTHLVTPSE ILMGVSSTEA SITTEDKRDR DANIEEVNND ARGLEVELKE VGEAQTSQNG EINYHETTEN
0801: HTSESRENIF CSQASNLSTE MARDRHPITE GSAIPGDSMA YGQPLQAGDE RGLDSRDVSA KLPESGSSSG LVATNSKGKK QKAKNSQGPG LSSTSSNVAN
0901: LADSFNEQSQ SLNHPMADLL PQLLALQETM TQVMASQKEM QRQLSNAVTG PIVKEGKKLE VALGRMIEKS SKSNADALWA HFQEEAVKNE KALRDHGQQI
1001: MNETTNFTSK ELNAMFEKTM KKEFASVGPT LARVVTPVIE KTVSSAITES FQRGIGDKAV NQLEKSVNSK LETTVARQIQ AQFQTSGRQV LQEGLRSSME
1101: SSVIPSFERS CKTMFEQVDS TLQKGIGKHT SATQQRIDSG QSQLAHTLRE TISSASSVTQ ALNRELAESQ RNRLALTAAG SNPLVTQLSN GPLGALLEKV
1201: EAPMDPTTEL SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISTDTSRKLG WMTDVVTAIN PSDQMIAVHA
1301: RPIFEQVYQI LHHHRNAPGS DVSAVRLIMH VINSLLMSCK

Arabidopsis Description

VCRVaricose-related protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.