CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44011	Canola	plastid	96.2	90.58
CDY44010	Canola	plastid	74.52	72.72
CDY23587	Canola	plastid	76.34	71.55
AT3G13300.1	Thale cress	cytosol	74.86	67.34
AT3G13290.1	Thale cress	cytosol	73.95	66.72
Zm00001d008821_P001	Maize	extracellular	6.7	57.04
Zm00001d048003_P001	Maize	extracellular	7.2	51.18
Solyc03g071660.1.1	Tomato	cytosol	7.86	50.8
Solyc09g055300.1.1	Tomato	cytosol	3.64	49.44
KRG98417	Soybean	cytosol	45.57	49.37
KRH46493	Soybean	plastid	54.01	48.51
GSMUA_Achr5P04250_001	Banana	plastid	48.39	47.83
VIT_19s0015g01380.t01	Wine grape	plastid	55.42	47.82
GSMUA_Achr3P10880_001	Banana	plastid	46.24	46.82
Solyc07g065950.2.1	Tomato	plastid	53.85	46.27
GSMUA_Achr3P04200_001	Banana	plastid	46.24	45.86
Solyc07g021140.1.1	Tomato	cytosol	4.96	45.8
Solyc10g005920.2.1	Tomato	plastid	52.94	45.13
VIT_03s0091g01220.t01	Wine grape	cytosol	11.99	44.34
TraesCS7A01G220400.4	Wheat	plastid	46.48	43.0
TraesCS7D01G221700.1	Wheat	plastid	45.57	42.98
TraesCS7B01G127000.4	Wheat	plastid	46.48	42.97
GSMUA_Achr9P19760_001	Banana	plastid	47.23	42.96
Os06t0300800-01	Rice	plasma membrane	47.23	42.8
EES05610	Sorghum	plastid	46.73	42.26
Os02t0722800-01	Rice	plasma membrane	46.73	42.2
Zm00001d017883_P002	Maize	plastid	46.9	41.51
TraesCS6A01G286100.3	Wheat	golgi	43.01	41.04
TraesCS6D01G266500.2	Wheat	cytosol, plastid	43.92	40.2
TraesCS6B01G314800.3	Wheat	plastid	44.5	39.68
Solyc12g062490.1.1	Tomato	nucleus, plastid	3.97	39.34
HORVU7Hr1G045240.3	Barley	plastid	25.97	39.15
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	44.5	38.76
Solyc02g005370.1.1	Tomato	cytosol	4.38	38.41
Zm00001d051678_P001	Maize	cytosol	43.92	38.28
Solyc11g039850.1.1	Tomato	cytosol	3.23	37.5
Zm00001d002560_P001	Maize	mitochondrion	14.72	37.4
VIT_03s0091g01230.t01	Wine grape	nucleus	6.29	29.12

Protein Annotations

Gene3D:1.10.220.100	MapMan:16.8.2.2.4	Gene3D:2.130.10.10	UniProt:A0A078GAY2	EnsemblPlants:CDY23580	ProteinID:CDY23580
ProteinID:CDY23580.1	InterPro:EDC4_WD40	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00023775001
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF16529	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0004EE845C	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC05g40140DBnaC05g40140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAY2]

Coordinates

chrLK032145:+:157696..163115

Molecular Weight (calculated)

131685.0 Da

IEP (calculated)

5.683

GRAVY (calculated)

-0.354

Length

1209 amino acids

Sequence
(BLAST)

0001: MASSPGNTNP NNPPPFDLGT LFKPSSSPFP TPPASYPPPA GPFLHNEAVT SSSSSPAANL HQQQRTLSCK FPMGRRLSGE HAVYDVDVRL HGEIQPQLEV
0101: TPITKYGSDP QLVVGRQIAV SKVYICYGLK GGSIRVLNIN TALRALFRGH SQRVTDMAFF AQDVHLLASV SLDGKVFVWK ISEGSEGDDD PQITGKIVLA
0201: LQILGEEDTK HPRVCWHSHK QEILVVSIGK HVLLIDTSKV GRGEVFSSES PIQCHLDKLV DGVKIVGKHD GEVTDLSICQ WMTTRLVSSS VDGTVKIWKD
0301: FMAQPVAVLR PHDGYPVNSS TFVTSPERPD HIILITGGPL NREMKIWVPA GEEGWLLSAE SESWNCTQKL DLKSSTEPRA EMAFFNQITA LSEAGLLLLA
0401: NAKRNAIYAV HLDYGSSPAD TRMDFLSEFT VTMPILSFIG THDPSEEPIV KVYCVQTQAI QQYTLDLCLC LPPSGEENVG LEKSDSKPSG LKPTEFPSVD
0501: SVPKPSILVN RSQGSASGDT TAPAIVPSNS EPRTSGLLSD TNGGGSAYAT AAQLPLSPRL SSKLSGYQTP VEAFEQVESR YELSGKAPSA DYGVDKHTFE
0601: ESSSSEEKNI TPDDDESGIR SSPSFFKHPT HLVKPSEFSM GVSSAETPVA TEDKSDRVNN DASGTEIEAS EVGEVNYHEE TMNGTSESRE KIFYSQALNL
0701: STEMARDCYP NTDETKAYEQ SVQADDSLES RDVSAKIPEL VSSSGLPQLA ATNSKGKKQK AKSSQNPNSS ADSYNEKSQS LSHPLTDSLP QFLAMQETMN
0801: QIMVSQKEMQ RQLSNAVNGP VTKEGKRLEV AIGRMIERSS KSNSDALWAR LQEETVKSEK AMRDHSQQIV NATTNFMSKE LNAMFEKTVK KEVSAIAPVI
0901: ARAVTPAIEK TISSAITESF QRGLGDKAVN QLDRSVNSKI EATIPRHIQT QFQTSAIPVL QEALKSGLEA SLIPSFERLC KTMLEQVDTA LEKGIAEHTN
1001: AAQQRFEAGH SQLAHTLKET ITSTSSVTQA LSRELAESQR NRSGVLTGGS DPSVTQVSKG PVATLLEKVE APMDPTAQLS RLVSEGKYEE SFTSALQRSD
1101: VSIVSWLCAQ VDLHRLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLGW MTDVVTAINP SDQMIVVHAR RIFEQVYQIL HHQLNAPGSD VSAIRLIMHV
1201: LNSMLMGCK

Best Arabidopsis Sequence Match ( AT3G13300.2 )
(BLAST)

0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.