Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G286100.3 | Wheat | golgi | 90.46 | 94.32 |
| TraesCS6B01G314800.3 | Wheat | plastid | 96.67 | 94.17 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 92.96 | 88.47 |
| Os02t0722800-01 | Rice | plasma membrane | 74.64 | 73.64 |
| EES05610 | Sorghum | plastid | 74.03 | 73.15 |
| Zm00001d017883_P002 | Maize | plastid | 71.61 | 69.25 |
| Zm00001d051678_P001 | Maize | cytosol | 71.61 | 68.2 |
| TraesCS7D01G221700.1 | Wheat | plastid | 63.89 | 65.83 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 49.81 | 55.11 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 50.11 | 54.31 |
| Solyc03g071660.1.1 | Tomato | cytosol | 7.42 | 52.41 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 48.3 | 52.17 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 51.55 | 51.24 |
| Zm00001d008821_P001 | Maize | extracellular | 5.45 | 50.7 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.41 | 50.56 |
| VIT_00s2472g00010.t01 | Wine grape | cytosol, peroxisome | 5.83 | 50.33 |
| Solyc07g021140.1.1 | Tomato | cytosol | 4.92 | 49.62 |
| Solyc11g032180.1.1 | Tomato | cytosol | 3.41 | 48.91 |
| KRH63269 | Soybean | cytosol | 5.9 | 48.75 |
| VIT_00s0455g00020.t01 | Wine grape | plastid | 49.89 | 48.0 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 48.75 | 45.97 |
| Zm00001d048003_P001 | Maize | extracellular | 5.9 | 45.88 |
| VIT_00s1618g00010.t01 | Wine grape | cytosol | 13.47 | 45.88 |
| CDY44010 | Canola | plastid | 42.32 | 45.12 |
| KRH46493 | Soybean | plastid | 45.95 | 45.1 |
| KRG98417 | Soybean | cytosol | 37.24 | 44.09 |
| CDY23580 | Canola | plastid | 40.2 | 43.92 |
| CDY23587 | Canola | plastid | 42.69 | 43.72 |
| KRH11647 | Soybean | endoplasmic reticulum | 46.33 | 43.56 |
| Bra034693.1-P | Field mustard | cytosol | 37.93 | 43.45 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 43.6 | 43.31 |
| AT3G13290.1 | Thale cress | cytosol | 43.75 | 43.13 |
| Zm00001d002560_P001 | Maize | mitochondrion | 15.52 | 43.07 |
| AT3G13300.1 | Thale cress | cytosol | 43.75 | 43.01 |
| KRH36660 | Soybean | endoplasmic reticulum | 45.8 | 43.0 |
| Solyc07g065950.2.1 | Tomato | plastid | 45.27 | 42.5 |
| CDY44011 | Canola | plastid | 40.88 | 42.06 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.39 | 42.03 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 3.86 | 41.8 |
| Solyc10g005920.2.1 | Tomato | plastid | 44.74 | 41.68 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.26 | 41.35 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 9.99 | 40.37 |
| KRH46495 | Soybean | cytosol | 18.77 | 40.26 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 4.62 | 23.37 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:EDC4_WD40 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF16529 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 | PANTHER:PTHR15598:SF6 | SMART:SM00320 | SUPFAM:SSF50978 |
| EnsemblPlantsGene:TraesCS6D01G266500 | EnsemblPlants:TraesCS6D01G266500.2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6D:-:376076803..376084895
Molecular Weight (calculated)
143780.0 Da
IEP (calculated)
5.805
GRAVY (calculated)
-0.359
Length
1321 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASPAGNPNP NPGNPNPPFE MAMLFRPPPN PAPTAAPMFP GAAGPPPHSG PYSYPPATPP FHLRPYLHYP QDPQPPMPRP VIPFPMPNPN ANPNPGANPM
0101: AAAGPNPGAR LMQLLGSSGS GHLESAVSMP PPSSEFAAAQ PSPLPAMPSA PPARMLSSTS SKVPRGRLLG GGDKAVHNVD SRLPGEAQPP QLEVTPITKY
0201: TSDPGLVLGR QIAVNRTYIV YGLKLGNIRV LNINTALRSL LRGHTQRVTD MAFFAEDVHR LASASVDGRI YVWRIDEGPD AENKPQITGK IEVAIQIVGD
0301: AEAYHPRICW HSHKQELLFV GIRNCVLRID TTKVGRGRDF NAEEPIKCHL DELIDGVRLV GRHDGDVTDL SISQWMTTRL ASGSNDGTVK IWDDRKLAPL
0401: SILKPHDGQA VYSVAFLTAP ERPHHINLIT AGPLNREIKI WASTNEEGWL LPSDSETWNC TQTLELVSSL EPKVEEAFFN QVAVLPQASI ILLANAKKNA
0501: IYAVHVEYGS DPASTRLDYI ADFTVAMPIL SLTGTHESQP DGEQVVQVYC VQTMAIQQYG LELSLCSPPT SDTNSFGRDP AISRVYDTPL EVVGAESSTG
0601: TSVTDSYTVG TSSKQSTFDQ TAEFDLKPSA PPLTYTEGDG SVHLQSAPLA SNTDLTGSGP VGNRDKDQSA FDYSTSRITE PVALTRQDTP MPKPVALARQ
0701: DTPMPKPVAL ARQDTPMPKD NFGKDELRDS NSDVQMLPNP RMMFKDDSIS SPRIAEVEAK HVNEGKSNHD LELEAVKEAQ VVRENSEKDQ NSLEQTVEMI
0801: SERSVTTDKY SVEESRSPSD RLVPDHTGAA GENVSNKTIE KPGISDSSVS REQSSSYTKD KVFHPQASGQ SSPSTSAFNS TESSHEPVSS AYPPIESSSE
0901: VADMLQQLIA MQKDMQKQLG TIVIAPIAKE GKRIETSLGR TMEKSIKASI DALWARFLEE NTKREKAERE RMQQMTTLIT SSINKDLPAM LDKLVKKEVP
1001: SLGPVVARAM TPIIEKSLTS IVADAVQKAV GDKVVNQLDK SVTAKLEATL ARQIQMQFHT SVKQTLQDVL RTSFESLLVP AFEQSCKTMF EQVDSAFQKG
1101: MSEHAVAIQQ QVEAAHTPLV LTLKETITSA SSITQNLTSE LLDGHRKILA LVTSGNANAQ NTNVLQPNNG PITGPPEVEA PLDPMKELSR LLSEHKFDEA
1201: FTVALQRSDV SIVSWLCSQV DLRGLCTMAP VPLNQGVLLA LLQQLAVDIG TETSRKIQWM TDVAMAINPT DQVIAIHVRP IFEQVYAKLA HHRSLPTTSP
1301: LDNSNLRLLM HVINSVLLSY K
0101: AAAGPNPGAR LMQLLGSSGS GHLESAVSMP PPSSEFAAAQ PSPLPAMPSA PPARMLSSTS SKVPRGRLLG GGDKAVHNVD SRLPGEAQPP QLEVTPITKY
0201: TSDPGLVLGR QIAVNRTYIV YGLKLGNIRV LNINTALRSL LRGHTQRVTD MAFFAEDVHR LASASVDGRI YVWRIDEGPD AENKPQITGK IEVAIQIVGD
0301: AEAYHPRICW HSHKQELLFV GIRNCVLRID TTKVGRGRDF NAEEPIKCHL DELIDGVRLV GRHDGDVTDL SISQWMTTRL ASGSNDGTVK IWDDRKLAPL
0401: SILKPHDGQA VYSVAFLTAP ERPHHINLIT AGPLNREIKI WASTNEEGWL LPSDSETWNC TQTLELVSSL EPKVEEAFFN QVAVLPQASI ILLANAKKNA
0501: IYAVHVEYGS DPASTRLDYI ADFTVAMPIL SLTGTHESQP DGEQVVQVYC VQTMAIQQYG LELSLCSPPT SDTNSFGRDP AISRVYDTPL EVVGAESSTG
0601: TSVTDSYTVG TSSKQSTFDQ TAEFDLKPSA PPLTYTEGDG SVHLQSAPLA SNTDLTGSGP VGNRDKDQSA FDYSTSRITE PVALTRQDTP MPKPVALARQ
0701: DTPMPKPVAL ARQDTPMPKD NFGKDELRDS NSDVQMLPNP RMMFKDDSIS SPRIAEVEAK HVNEGKSNHD LELEAVKEAQ VVRENSEKDQ NSLEQTVEMI
0801: SERSVTTDKY SVEESRSPSD RLVPDHTGAA GENVSNKTIE KPGISDSSVS REQSSSYTKD KVFHPQASGQ SSPSTSAFNS TESSHEPVSS AYPPIESSSE
0901: VADMLQQLIA MQKDMQKQLG TIVIAPIAKE GKRIETSLGR TMEKSIKASI DALWARFLEE NTKREKAERE RMQQMTTLIT SSINKDLPAM LDKLVKKEVP
1001: SLGPVVARAM TPIIEKSLTS IVADAVQKAV GDKVVNQLDK SVTAKLEATL ARQIQMQFHT SVKQTLQDVL RTSFESLLVP AFEQSCKTMF EQVDSAFQKG
1101: MSEHAVAIQQ QVEAAHTPLV LTLKETITSA SSITQNLTSE LLDGHRKILA LVTSGNANAQ NTNVLQPNNG PITGPPEVEA PLDPMKELSR LLSEHKFDEA
1201: FTVALQRSDV SIVSWLCSQV DLRGLCTMAP VPLNQGVLLA LLQQLAVDIG TETSRKIQWM TDVAMAINPT DQVIAIHVRP IFEQVYAKLA HHRSLPTTSP
1301: LDNSNLRLLM HVINSVLLSY K
0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.