Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 3
- nucleus 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44010 | Canola | plastid | 91.13 | 97.82 |
| Bra034693.1-P | Field mustard | cytosol | 67.67 | 78.06 |
| AT3G13300.1 | Thale cress | cytosol | 77.14 | 76.34 |
| AT3G13290.1 | Thale cress | cytosol | 74.36 | 73.81 |
| Zm00001d008821_P001 | Maize | extracellular | 6.17 | 57.75 |
| Solyc03g071660.1.1 | Tomato | cytosol | 7.89 | 56.15 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.61 | 53.93 |
| KRG98417 | Soybean | cytosol | 44.74 | 53.32 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 55.79 | 52.96 |
| KRH46493 | Soybean | plastid | 53.38 | 52.75 |
| Solyc07g021140.1.1 | Tomato | cytosol | 5.19 | 52.67 |
| Zm00001d048003_P001 | Maize | extracellular | 6.62 | 51.76 |
| Solyc07g065950.2.1 | Tomato | plastid | 53.91 | 50.96 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 46.09 | 50.12 |
| Solyc10g005920.2.1 | Tomato | plastid | 52.93 | 49.65 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 44.44 | 49.5 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 45.04 | 49.14 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 46.47 | 46.5 |
| EES05610 | Sorghum | plastid | 46.47 | 46.22 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 4.21 | 45.9 |
| Os02t0722800-01 | Rice | plasma membrane | 46.09 | 45.78 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.74 | 45.65 |
| Zm00001d017883_P002 | Maize | plastid | 46.84 | 45.61 |
| Os06t0300800-01 | Rice | plasma membrane | 45.56 | 45.43 |
| TraesCS7B01G127000.4 | Wheat | plastid | 44.59 | 45.34 |
| TraesCS7D01G221700.1 | Wheat | plastid | 43.68 | 45.32 |
| TraesCS7A01G220400.4 | Wheat | plastid | 44.51 | 45.29 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.53 | 45.19 |
| TraesCS6A01G286100.3 | Wheat | golgi | 42.03 | 44.12 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 43.31 | 43.6 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 10.68 | 43.43 |
| TraesCS6B01G314800.3 | Wheat | plastid | 43.46 | 42.63 |
| Zm00001d051678_P001 | Maize | cytosol | 44.21 | 42.39 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 43.76 | 41.93 |
| HORVU7Hr1G045240.3 | Barley | plastid | 24.89 | 41.27 |
| Zm00001d002560_P001 | Maize | mitochondrion | 14.21 | 39.71 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 6.84 | 34.87 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | EnsemblPlantsGene:Bra034692 | EnsemblPlants:Bra034692.1 | EnsemblPlants:Bra034692.1-P |
| InterPro:EDC4_WD40 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | UniProt:M4F0U7 | PFAM:PF16529 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 |
| PANTHER:PTHR15598:SF7 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000254808D | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
AT3G13300 (E=0.0) VCS | VCS (VARICOSE); nucleotide binding / protein homodimerization
Coordinates
chrA05:-:21008181..21013880
Molecular Weight (calculated)
144485.0 Da
IEP (calculated)
6.088
GRAVY (calculated)
-0.403
Length
1330 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASSPGNTNP NNPPPFDLGT LFKPSSSPFP TPPASYPPPA GPFLQQPYAP PPPQQEAAPS SSSSLLQQQR SLPFPSPPLN LLHSPSPSPS PRTSANHNPG
0101: THILALLNNN GGVNNQDPPP QQHQAPEIRS FPSGPLRVPS CKLPRGRRLS GEHAVYDVDV RLHGEIQPQL EVTPITKYGS DPQLVVGRQI AVNKIYICYG
0201: LKGGNIRVLN INTALRALFR GHSQRVTDMA FFAHDVHLLA SVSLDGKVFV WKISEGSEGD DDPQITGKIV LALQILGEED TKHPRVCWHS HKQEILVVSI
0301: GKHVLLVDTT KVGRGEVFSS ESPIQCHLDK LVDGVKIVGK HDGEVTDLSM CQWMITRLVS SSVDGTVKIW QDFKAQPVAV LRPHDGHPVN SATFVTSPER
0401: SDHVILITGG PLNREMKIWV PTGEEGWLLP AESESWNCTQ KLDLKSSTEP RAEMAFFNQV IALSEAGLLL LANAKRNAIY AVHLDYGASP ADTRMDYLSE
0501: FTVTMPILSF IGTNDPPEEA VVKVYCVQTQ AIQQYTLDLS LCLPPPIEEN VGLEKSDSSV SREANLVEGI SKPSGMKLTD LPSVDSVPKP SILVNRSKGA
0601: NTSTYPAGSA SVETTAPVLV SSNGEPKASG LLSETSAAGS TYATSPQLPL SPRLSSTLSG HQTPVDVIEP MLPHHELGGQ GPSSVYSVDR QPDPVKERNL
0701: EESSRSKDND VTPDDDVSGM RTAQAFFKHP THLVTPSEFL MRVPSTEASI TTDDKRDRDA NIQDVNIDSR DTEVEVKEVG ESSSTQNGEI NYSDETEHRT
0801: SVNTEKTFYS QTTNLSTEMA RDCYPGTELE ESKAYEQSVQ AGDNLDSRDV SGKLPESVSS IGLSQSAATN KGKKQKSKSS QGPGLSSTSS NVANLADTYN
0901: EQTQSSSQPI LALQETMNQM MVSQKEMQRQ LSNAVNGPVT KEGKRLEVAL GRMIERSSKS NADALWARLQ EEIVKNEKAM RDNSQQIVNA VTNFMSKELN
1001: ALFEKTIKKE FATMIPALAR ALSPAIEKTV SSSVTESFQR GLGDKAVNQL DKSVNLKLEA TITKQIQTQF QTSGRQALQE ALRSGLEASL IPSFERSCKT
1101: MFEQVDAAFQ KGMAEHTNAA QQRFDAGHSQ LAHTLKETIT SASSVTQALS RELAESQRNR LALAAAGANS SGSNTLVSQR SSGPLGALLE KVEADPITEL
1201: SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISKDSSRKLA WMTDVVAAIN PSDPMVAVHG RPIFEQVYQI
1301: LHHHRNAPGS DVSATRLIMH VINSMLMACK
0101: THILALLNNN GGVNNQDPPP QQHQAPEIRS FPSGPLRVPS CKLPRGRRLS GEHAVYDVDV RLHGEIQPQL EVTPITKYGS DPQLVVGRQI AVNKIYICYG
0201: LKGGNIRVLN INTALRALFR GHSQRVTDMA FFAHDVHLLA SVSLDGKVFV WKISEGSEGD DDPQITGKIV LALQILGEED TKHPRVCWHS HKQEILVVSI
0301: GKHVLLVDTT KVGRGEVFSS ESPIQCHLDK LVDGVKIVGK HDGEVTDLSM CQWMITRLVS SSVDGTVKIW QDFKAQPVAV LRPHDGHPVN SATFVTSPER
0401: SDHVILITGG PLNREMKIWV PTGEEGWLLP AESESWNCTQ KLDLKSSTEP RAEMAFFNQV IALSEAGLLL LANAKRNAIY AVHLDYGASP ADTRMDYLSE
0501: FTVTMPILSF IGTNDPPEEA VVKVYCVQTQ AIQQYTLDLS LCLPPPIEEN VGLEKSDSSV SREANLVEGI SKPSGMKLTD LPSVDSVPKP SILVNRSKGA
0601: NTSTYPAGSA SVETTAPVLV SSNGEPKASG LLSETSAAGS TYATSPQLPL SPRLSSTLSG HQTPVDVIEP MLPHHELGGQ GPSSVYSVDR QPDPVKERNL
0701: EESSRSKDND VTPDDDVSGM RTAQAFFKHP THLVTPSEFL MRVPSTEASI TTDDKRDRDA NIQDVNIDSR DTEVEVKEVG ESSSTQNGEI NYSDETEHRT
0801: SVNTEKTFYS QTTNLSTEMA RDCYPGTELE ESKAYEQSVQ AGDNLDSRDV SGKLPESVSS IGLSQSAATN KGKKQKSKSS QGPGLSSTSS NVANLADTYN
0901: EQTQSSSQPI LALQETMNQM MVSQKEMQRQ LSNAVNGPVT KEGKRLEVAL GRMIERSSKS NADALWARLQ EEIVKNEKAM RDNSQQIVNA VTNFMSKELN
1001: ALFEKTIKKE FATMIPALAR ALSPAIEKTV SSSVTESFQR GLGDKAVNQL DKSVNLKLEA TITKQIQTQF QTSGRQALQE ALRSGLEASL IPSFERSCKT
1101: MFEQVDAAFQ KGMAEHTNAA QQRFDAGHSQ LAHTLKETIT SASSVTQALS RELAESQRNR LALAAAGANS SGSNTLVSQR SSGPLGALLE KVEADPITEL
1201: SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISKDSSRKLA WMTDVVAAIN PSDPMVAVHG RPIFEQVYQI
1301: LHHHRNAPGS DVSATRLIMH VINSMLMACK
0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.