Factsheet for VIT_03s0091g01230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s1618g00010.t01	Wine grape	cytosol	32.57	21.91
VIT_19s0015g01380.t01	Wine grape	plastid	78.93	14.7
KRG98417	Soybean	cytosol	48.28	11.29
KRH46493	Soybean	plastid	49.43	9.58
VIT_00s0455g00020.t01	Wine grape	plastid	45.21	8.59
Solyc07g065950.2.1	Tomato	plastid	42.53	7.89
HORVU7Hr1G045240.3	Barley	plastid	23.75	7.73
Solyc10g005920.2.1	Tomato	plastid	41.0	7.55
AT3G13290.1	Thale cress	cytosol	36.78	7.16
AT3G13300.1	Thale cress	cytosol	36.4	7.07
Bra034693.1-P	Field mustard	cytosol	30.27	6.85
Bra034692.1-P	Field mustard	cytosol, plastid	34.87	6.84
CDY23587	Canola	plastid	31.42	6.36
CDY23580	Canola	plastid	29.12	6.29
CDY44010	Canola	plastid	29.5	6.21
CDY44011	Canola	plastid	30.27	6.15
TraesCS6A01G286100.3	Wheat	golgi	28.74	5.92
Zm00001d017883_P002	Maize	plastid	29.12	5.56
TraesCS6B01G314800.3	Wheat	plastid	28.74	5.53
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	28.35	5.33
GSMUA_Achr3P10880_001	Banana	plastid	24.14	5.28
EES05610	Sorghum	plastid	26.82	5.24
Os02t0722800-01	Rice	plasma membrane	26.05	5.08
Zm00001d051678_P001	Maize	cytosol	26.82	5.05
GSMUA_Achr5P04250_001	Banana	plastid	22.99	4.91
GSMUA_Achr9P19760_001	Banana	plastid	24.9	4.89
Os06t0300800-01	Rice	plasma membrane	24.9	4.87
TraesCS7B01G127000.4	Wheat	plastid	23.75	4.74
TraesCS7A01G220400.4	Wheat	plastid	23.37	4.67
TraesCS6D01G266500.2	Wheat	cytosol, plastid	23.37	4.62
TraesCS7D01G221700.1	Wheat	plastid	18.77	3.82
GSMUA_Achr3P04200_001	Banana	plastid	17.62	3.77
Solyc09g055300.1.1	Tomato	cytosol	0.77	2.25
Solyc12g062490.1.1	Tomato	nucleus, plastid	0.77	1.64
Solyc07g021140.1.1	Tomato	cytosol	0.77	1.53
Solyc02g005370.1.1	Tomato	cytosol	0.77	1.45
Zm00001d002560_P001	Maize	mitochondrion	1.92	1.05
Solyc11g039850.1.1	Tomato	cytosol	0.38	0.96
VIT_03s0091g01220.t01	Wine grape	cytosol	0.77	0.61
Solyc03g071660.1.1	Tomato	cytosol	0.38	0.53
VIT_00s2472g00010.t01	Wine grape	cytosol, peroxisome	0.0	0.0
Zm00001d008821_P001	Maize	extracellular	0.0	0.0
Zm00001d048003_P001	Maize	extracellular	0.0	0.0

Protein Annotations

ArrayExpress:VIT_03s0091g01230	EMBL:FN595242	EnsemblPlants:VIT_03s0091g01230.t01	EnsemblPlantsGene:VIT_03s0091g01230	GO:GO:0000932	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0031087	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	ProteinID:CCB47689
ProteinID:CCB47689.1	SEG:seg	UniParc:UPI000210924A	UniProt:F6H689	MapMan:35.1	:

Description

No Description!

Coordinates

chr3:-:7890272..7892417

Molecular Weight (calculated)

28425.6 Da

IEP (calculated)

4.606

GRAVY (calculated)

-0.243

Length

261 amino acids

Sequence
(BLAST)

001: MCSSRKPSNW RGDRAGALRD FLNWMLVYCF QTQAIQQFAL NLSQCLPLLS ENVWVEKSDS GVSHCVTNAE GFGILEPLGT KLTKMPLTSS PLKSTMLISS
101: SESEPGVRYL VSSASIEFAT LSPESKPGAL PLVNNDNDIV SIPSPPLPLS PRLSGKLSGF RSPTNNFEPG LTLGDRGDGN QVVIDYSIDR QMDTICTTLS
201: DLPSLDDDSR TDENKVAQYD SSTILNPTVM FKHPTHLITP SEIFIAISSA EATHNIESKS E

Best Arabidopsis Sequence Match ( AT3G13300.3 )
(BLAST)

0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVCTSLEL ITNHKSCFCL VHEHFSYSWW LFAA

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.