Factsheet for Solyc03g071660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g021140.1.1	Tomato	cytosol	52.41	74.81
Solyc12g062490.1.1	Tomato	nucleus, plastid	46.52	71.31
Solyc02g005370.1.1	Tomato	cytosol	50.8	68.84
Solyc09g055300.1.1	Tomato	cytosol	32.62	68.54
Solyc11g039850.1.1	Tomato	cytosol	35.29	63.46
Solyc11g032180.1.1	Tomato	cytosol	30.48	61.96
VIT_03s0091g01220.t01	Wine grape	cytosol	36.9	21.1
Zm00001d002560_P001	Maize	mitochondrion	35.29	13.87
Solyc07g065950.2.1	Tomato	plastid	86.63	11.51
Zm00001d008821_P001	Maize	extracellular	7.49	9.86
KRG98417	Soybean	cytosol	57.22	9.59
Zm00001d048003_P001	Maize	extracellular	8.56	9.41
Solyc10g005920.2.1	Tomato	plastid	69.52	9.17
VIT_19s0015g01380.t01	Wine grape	plastid	65.24	8.71
GSMUA_Achr3P10880_001	Banana	plastid	55.08	8.63
CDY44010	Canola	plastid	56.68	8.56
GSMUA_Achr5P04250_001	Banana	plastid	55.62	8.5
GSMUA_Achr3P04200_001	Banana	plastid	54.55	8.37
AT3G13300.1	Thale cress	cytosol	59.89	8.33
AT3G13290.1	Thale cress	cytosol	58.82	8.21
Bra034693.1-P	Field mustard	cytosol	49.73	8.07
KRH46493	Soybean	plastid	57.75	8.02
CDY23587	Canola	plastid	55.08	7.98
Bra034692.1-P	Field mustard	cytosol, plastid	56.15	7.89
CDY23580	Canola	plastid	50.8	7.86
TraesCS6A01G286100.3	Wheat	golgi	51.87	7.66
GSMUA_Achr9P19760_001	Banana	plastid	54.01	7.6
TraesCS6D01G266500.2	Wheat	cytosol, plastid	52.41	7.42
TraesCS7D01G221700.1	Wheat	plastid	50.8	7.41
TraesCS7A01G220400.4	Wheat	plastid	50.8	7.27
TraesCS7B01G127000.4	Wheat	plastid	50.8	7.26
CDY44011	Canola	plastid	49.73	7.24
TraesCS6B01G314800.3	Wheat	plastid	52.41	7.23
Os06t0300800-01	Rice	plasma membrane	51.34	7.2
Os02t0722800-01	Rice	plasma membrane	50.8	7.09
EES05610	Sorghum	plastid	50.27	7.03
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	51.87	6.99
Zm00001d017883_P002	Maize	plastid	49.2	6.73
Zm00001d051678_P001	Maize	cytosol	48.66	6.56
VIT_03s0091g01230.t01	Wine grape	nucleus	0.53	0.38
HORVU7Hr1G045240.3	Barley	plastid	1.6	0.37

Protein Annotations

EnsemblPlants:Solyc03g071660.1.1	EnsemblPlantsGene:Solyc03g071660.1	GO:GO:0000932	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0031087	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	UniParc:UPI0002767BD3	UniProt:K4BHJ6	MapMan:35.1

Description

No Description!

Coordinates

chr3:+:18305959..18306838

Molecular Weight (calculated)

20728.6 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.302

Length

187 amino acids

Sequence
(BLAST)

001: MKGVRDNAVN QLEKAVNSEL EATVARQSQA QFLTSSKQTL QETLKSTLEV LVIPAFEMSC KAMFEQVNST FQKDIADHTI VAQQQFDSVH SPLTIALRDV
101: INSTSAMTHT LSRELADSQR QLLALVVSRA NSQSTNPLNH MSNGSLLHEK IETPTDPTKE ISRQLGEHKY EEVFTVALQM SDVSIVS

Best Arabidopsis Sequence Match ( AT3G13300.2 )
(BLAST)

0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.