Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plastid 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G286100.3 | Wheat | golgi | 72.14 | 76.24 |
| EES05610 | Sorghum | plastid | 76.03 | 76.14 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 73.64 | 74.64 |
| TraesCS6B01G314800.3 | Wheat | plastid | 75.13 | 74.19 |
| Zm00001d017883_P002 | Maize | plastid | 74.31 | 72.84 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 75.43 | 72.77 |
| Zm00001d008821_P001 | Maize | extracellular | 7.54 | 71.13 |
| VIT_00s2472g00010.t01 | Wine grape | cytosol, peroxisome | 7.99 | 69.93 |
| Zm00001d051678_P001 | Maize | cytosol | 70.13 | 67.7 |
| Os06t0300800-01 | Rice | plasma membrane | 66.84 | 67.09 |
| Zm00001d048003_P001 | Maize | extracellular | 7.69 | 60.59 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 52.95 | 59.38 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 51.68 | 56.58 |
| KRH63269 | Soybean | cytosol | 6.72 | 56.25 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 55.49 | 55.91 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 50.71 | 55.7 |
| VIT_00s0455g00020.t01 | Wine grape | plastid | 53.4 | 52.08 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.44 | 51.69 |
| Solyc03g071660.1.1 | Tomato | cytosol | 7.09 | 50.8 |
| Zm00001d002560_P001 | Maize | mitochondrion | 17.63 | 49.58 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 51.61 | 49.32 |
| KRG98417 | Soybean | cytosol | 40.25 | 48.3 |
| KRH46493 | Soybean | plastid | 48.54 | 48.29 |
| CDY44010 | Canola | plastid | 44.51 | 48.1 |
| Solyc07g021140.1.1 | Tomato | cytosol | 4.71 | 48.09 |
| KRH11647 | Soybean | endoplasmic reticulum | 49.96 | 47.62 |
| KRH36660 | Soybean | endoplasmic reticulum | 49.44 | 47.05 |
| CDY23587 | Canola | plastid | 45.18 | 46.9 |
| Bra034693.1-P | Field mustard | cytosol | 40.25 | 46.75 |
| Solyc11g032180.1.1 | Tomato | cytosol | 3.21 | 46.74 |
| CDY23580 | Canola | plastid | 42.2 | 46.73 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 45.78 | 46.09 |
| AT3G13300.1 | Thale cress | cytosol | 46.15 | 45.98 |
| VIT_00s1618g00010.t01 | Wine grape | cytosol | 13.29 | 45.88 |
| AT3G13290.1 | Thale cress | cytosol | 45.63 | 45.6 |
| Solyc07g065950.2.1 | Tomato | plastid | 47.65 | 45.34 |
| CDY44011 | Canola | plastid | 42.87 | 44.7 |
| Solyc10g005920.2.1 | Tomato | plastid | 46.68 | 44.08 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 10.53 | 43.12 |
| KRH46495 | Soybean | cytosol | 18.97 | 41.23 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 3.73 | 40.98 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.18 | 40.58 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.06 | 39.42 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 5.08 | 26.05 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | EntrezGene:4330568 | ProteinID:BAD13020.1 | ProteinID:BAD13023.1 |
| ProteinID:BAF09883.1 | ProteinID:BAS80669.1 | ncoils:Coil | InterPro:EDC4_WD40 | GO:GO:0000932 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0031087 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EnsemblPlantsGene:Os02g0722800 | EnsemblPlants:Os02t0722800-01 | PFAM:PF16529 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 | PANTHER:PTHR15598:SF6 | UniProt:Q6Z5M6 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI00003503F1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| RefSeq:XP_015626168.1 | SEG:seg | : | : | : | : |
Description
OsWD40-53WD40 repeat-like domain containing protein. (Os02t0722800-01);Similar to Peptidase S26A, signal peptidase I; WD40-like. (Os02t0722800-02)
Coordinates
chr2:-:30015998..30025935
Molecular Weight (calculated)
144626.0 Da
IEP (calculated)
6.017
GRAVY (calculated)
-0.310
Length
1339 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATPTGNPNP NPNPSTPFEV SMLFKPPSNA PAAAPIFPGG PAAGPPPPSA AYSYPPATPP FHRAPFLHYP QDPMAAPHMP RPVISFPMPT PNPAAIPSAA
0101: AAAAAAAGPS QNHGARLMQL LGSSGPAHLD SSASMPPPAS EFAAAQPPQP IPAMPSAPPA RMLSSTSSKM PRGRLLGGGD RAVHDVDSRL PGEAQPPQLE
0201: VTPITKYTSD PGLVLGRQIA VNRTYIVYGL KLGNIRVLNI NTALRSLLRG HTQRVTDMAF FAEDVHRLAS ASVDGRIYVW KIDEGPDEDS KPQITGKIEI
0301: AIQIVGDAES YHPRICWHSH KQEILFVGIG NCVLRIDTTK VRRGRDVSAE EPIKCHLDKL IDGVRLVGKH DDDVTDLSLS QWMTTRLASG SKDGTVKIWD
0401: DRKPVPLSIL KPHDGQAVYS VAFLTAPEHP DHINLVTAGP LNREVKIWAS ANEGGVLLPS DSETWNCTQT LELVSSLEPR VEEAFFNQVT VLPQASIILL
0501: ANAKKNAIYA VHVEYGTDPA STRLDYIADF TVAMPILSLT GTHESQPGND QVVQVYCVQT MAIQQYGLDL SLCSPPTSET TGLGRDPSIS RVHETPLEVV
0601: GAESSMPTSF TDSYSVGSPS KSSTVDQQSE LDPKPSAPPL TYTEGDGSVH LPSASLASNM DPSGSGSSLG NLEMDQPAFD YAMNRNVEPK ILTRQDTPMP
0701: KDNFGKDDPR DGRNDVTMLP NPHLMFKVGG NTTHLVTPSE IISGALSSAE SNHVPKSDGV KIQDGTSSGH QMAEVEPKHT NEHTFDQNLD LEVAQVVCEN
0801: TKQAGSSEQT VKMISERSVT TDKYSVEESQ TSCDRSISEH TGAADESVTK KPVEVPEKSD YSSASVEQSS SYTKKEKIMH PQASGQSSPS TSAFNSTESS
0901: HEPPSSAYPP INSFPEVTTQ GMLQQLIAMH KDLQKQLGTI VVAPLAKEGK RIEASLGRTM EKSIKANLDA LWVRIQEENA KREKAERERM QQMITLITNS
1001: ISKDLPATLE KSLKKEISSL GPVIARAITP IIEKCSASAV ADSIQKVVGD RVVNQLDKSV SAKLEATVAR QIQMQFHTSV KQTLQDALRA SLEAFLVPAF
1101: EQSCKTMFEQ VDSAFQKGMS EHTVAIQQQV EATHTPLAQT LKDTISSASS ITQNLTAELL DGHRKLLALL ASGNAKAHST NVLQPNNVPV TGPPEVEAPL
1201: DPMKELGRLI SERKFDEAFT MALQRSDVSI VSWLCSQVDL RALCSMVPVP LNQGVLLALL QQLAVDIATD TPRKIQWMTD VAMAINPTDP VIAMHVKPIF
1301: EQVYNALLHL RSLPTTSPSD STSIRLFMHV INSVLLSYK
0101: AAAAAAAGPS QNHGARLMQL LGSSGPAHLD SSASMPPPAS EFAAAQPPQP IPAMPSAPPA RMLSSTSSKM PRGRLLGGGD RAVHDVDSRL PGEAQPPQLE
0201: VTPITKYTSD PGLVLGRQIA VNRTYIVYGL KLGNIRVLNI NTALRSLLRG HTQRVTDMAF FAEDVHRLAS ASVDGRIYVW KIDEGPDEDS KPQITGKIEI
0301: AIQIVGDAES YHPRICWHSH KQEILFVGIG NCVLRIDTTK VRRGRDVSAE EPIKCHLDKL IDGVRLVGKH DDDVTDLSLS QWMTTRLASG SKDGTVKIWD
0401: DRKPVPLSIL KPHDGQAVYS VAFLTAPEHP DHINLVTAGP LNREVKIWAS ANEGGVLLPS DSETWNCTQT LELVSSLEPR VEEAFFNQVT VLPQASIILL
0501: ANAKKNAIYA VHVEYGTDPA STRLDYIADF TVAMPILSLT GTHESQPGND QVVQVYCVQT MAIQQYGLDL SLCSPPTSET TGLGRDPSIS RVHETPLEVV
0601: GAESSMPTSF TDSYSVGSPS KSSTVDQQSE LDPKPSAPPL TYTEGDGSVH LPSASLASNM DPSGSGSSLG NLEMDQPAFD YAMNRNVEPK ILTRQDTPMP
0701: KDNFGKDDPR DGRNDVTMLP NPHLMFKVGG NTTHLVTPSE IISGALSSAE SNHVPKSDGV KIQDGTSSGH QMAEVEPKHT NEHTFDQNLD LEVAQVVCEN
0801: TKQAGSSEQT VKMISERSVT TDKYSVEESQ TSCDRSISEH TGAADESVTK KPVEVPEKSD YSSASVEQSS SYTKKEKIMH PQASGQSSPS TSAFNSTESS
0901: HEPPSSAYPP INSFPEVTTQ GMLQQLIAMH KDLQKQLGTI VVAPLAKEGK RIEASLGRTM EKSIKANLDA LWVRIQEENA KREKAERERM QQMITLITNS
1001: ISKDLPATLE KSLKKEISSL GPVIARAITP IIEKCSASAV ADSIQKVVGD RVVNQLDKSV SAKLEATVAR QIQMQFHTSV KQTLQDALRA SLEAFLVPAF
1101: EQSCKTMFEQ VDSAFQKGMS EHTVAIQQQV EATHTPLAQT LKDTISSASS ITQNLTAELL DGHRKLLALL ASGNAKAHST NVLQPNNVPV TGPPEVEAPL
1201: DPMKELGRLI SERKFDEAFT MALQRSDVSI VSWLCSQVDL RALCSMVPVP LNQGVLLALL QQLAVDIATD TPRKIQWMTD VAMAINPTDP VIAMHVKPIF
1301: EQVYNALLHL RSLPTTSPSD STSIRLFMHV INSVLLSYK
0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.