Factsheet for GSMUA_Achr9P19760_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 1
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2472g00010.t01	Wine grape	cytosol, peroxisome	8.88	77.12
GSMUA_Achr3P10880_001	Banana	plastid	67.19	74.79
GSMUA_Achr5P04250_001	Banana	plastid	59.14	64.27
GSMUA_Achr3P04200_001	Banana	plastid	58.24	63.49
Zm00001d008821_P001	Maize	extracellular	6.77	63.38
KRH63269	Soybean	cytosol	6.85	56.88
EES05610	Sorghum	plastid	56.21	55.87
Os02t0722800-01	Rice	plasma membrane	55.91	55.49
Zm00001d048003_P001	Maize	extracellular	7.07	55.29
TraesCS7D01G221700.1	Wheat	plastid	52.75	54.68
TraesCS7B01G127000.4	Wheat	plastid	53.72	54.59
TraesCS7A01G220400.4	Wheat	plastid	53.57	54.48
Zm00001d017883_P002	Maize	plastid	55.76	54.25
Os06t0300800-01	Rice	plasma membrane	54.4	54.2
Solyc03g071660.1.1	Tomato	cytosol	7.6	54.01
VIT_00s0455g00020.t01	Wine grape	plastid	55.68	53.9
VIT_19s0015g01380.t01	Wine grape	plastid	55.15	52.32
HORVU7Hr1G045240.3	Barley	plastid	31.53	52.24
TraesCS6A01G286100.3	Wheat	golgi	49.74	52.17
TraesCS6D01G266500.2	Wheat	cytosol, plastid	51.24	51.55
Solyc09g055300.1.1	Tomato	cytosol	3.39	50.56
TraesCS6B01G314800.3	Wheat	plastid	51.47	50.44
Zm00001d051678_P001	Maize	cytosol	52.6	50.4
KRH46493	Soybean	plastid	51.02	50.37
KRG98417	Soybean	cytosol	42.21	50.27
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	52.22	50.0
KRH36660	Soybean	endoplasmic reticulum	51.92	49.04
KRH11647	Soybean	endoplasmic reticulum	51.69	48.9
Solyc07g021140.1.1	Tomato	cytosol	4.82	48.85
CDY44010	Canola	plastid	45.3	48.59
Solyc07g065950.2.1	Tomato	plastid	51.32	48.47
Bra034693.1-P	Field mustard	cytosol	41.46	47.79
Solyc10g005920.2.1	Tomato	plastid	50.56	47.39
CDY23580	Canola	plastid	42.96	47.23
VIT_03s0091g01220.t01	Wine grape	cytosol	11.59	47.09
AT3G13300.1	Thale cress	cytosol	47.4	46.88
CDY23587	Canola	plastid	45.15	46.51
AT3G13290.1	Thale cress	cytosol	46.88	46.49
Bra034692.1-P	Field mustard	cytosol, plastid	46.5	46.47
Solyc11g032180.1.1	Tomato	cytosol	3.16	45.65
Solyc02g005370.1.1	Tomato	cytosol	4.74	45.65
CDY44011	Canola	plastid	43.94	45.48
VIT_00s1618g00010.t01	Wine grape	cytosol	12.94	44.33
Solyc11g039850.1.1	Tomato	cytosol	3.31	42.31
Zm00001d002560_P001	Maize	mitochondrion	14.9	41.6
KRH46495	Soybean	cytosol	19.04	41.07
Solyc12g062490.1.1	Tomato	nucleus, plastid	3.76	40.98
VIT_03s0091g01230.t01	Wine grape	nucleus	4.89	24.9

Protein Annotations

Gene3D:1.10.220.100	MapMan:16.8.2.2.4	Gene3D:2.130.10.10	InterPro:EDC4_WD40	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr9G19760_001	EnsemblPlants:GSMUA_Achr9P19760_001	EnsemblPlants:GSMUA_Achr9T19760_001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0U1T5	PFAM:PF00400	PFAM:PF16529	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002951D18	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

WD domain, G-beta repeat domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G19760_001]

Coordinates

chr9:+:22344613..22354368

Molecular Weight (calculated)

143925.0 Da

IEP (calculated)

5.916

GRAVY (calculated)

-0.247

Length

1329 amino acids

Sequence
(BLAST)

0001: MASPAGSPNT SGNYEAQAVF KPPNAGPSPG SNPRPPFHLP SAYPAPPSSY PTPPLPGAFS YPPATPPFHH HPFLHYPQEP LHRPPAIYSP TAASPQLTNP
0101: NPTPNPSPSP NSNPGARLMA LLNPPAHLES PVSMPLPSST PSDFLSPSAT ATTILHPVPS APPAALVQPT PVRMPSNKLP RGRLLGSGER VVYDVDLRLP
0201: GELQPPQLEV TPITKYISDP GLVLGRQIAV NRNYICYGLK LGAIRVLNIN TALRSLLKGH SQRVTDMAFF AEDVHFLASA SIDGRIFVWK INEAPDEENK
0301: PQITGKIIMA IQIVGQGESR HPRICWHSHK QEILFVGVGN WVLKIDINKV GRGKEFLAEE PLKCHVEKLI DGVQITGKHD GEVTDLSISQ WMITRLVSAS
0401: KDGTVMIWDD RKVVPLAMFK PHDGHPVNSV AFMTSPHCPD HINLITSGPL SREVKVWASA GEEGWLLPTD SESWRCTQTL DLRSSLESRT EEAFFNQIVV
0501: LPQPSLIVIA NAKKNAIYAV HVDYGPYPSS TRMDYIADFT VAMPILSLTG THDCLPDGEQ VVQVYCVQTQ AIQQYALDLI QCLPPPTASA GLERDHLSHV
0601: VETRGMEGLA VPEPSSSQAV TKVSTVGTST LELSESSFEV QPSAPPAPSV DYSVDRRVDS FIESALDVPM TEGSTLKDES KAGQNDLSML SNPRLMFKLG
0701: GNSTHLVTPA EILSGAISSS ESSHANKRSI KEVKAQDMTT CDDIECAELE VKVVGEDKPG LQEFDSQKVP EDFAAEDKEI SPQTSIADFR MENECSTVKG
0801: TLEETRPGED NAISQSKKHL PSTFEAKIQD GVKNTTEEVT GSAVMAASQS PLAASGKKQI EKTSQRFSPS SPSSSPFNST ESFNEPGSST GAPPADAAFS
0901: EIPALQETVN QIISMQKEMQ KQMSLMVSAS VAKEGKRVET TLSRSMEKII KANLEAVWAR IQEENAKYEK FEKDRVQQMT NLITNHVNKD LPTILEKAAK
1001: KELSVIGSTV VRAITPIISS AIAESFQKGV GDKSVNQLEK SISSKLEATV ARQIQTQFQT SGKQVLEDAL RSCLESSVVP AFEHSCKTMS EQVGNVFKKG
1101: MSEHTAAALQ QLEVANSSLA LTLRDAINSA SSITQNLTTE LIDGQRKLLG LFAAGNTKAL DPLAVQQANG PSVGLPEMAL SIQQVGAPLD PTKELSRLIS
1201: ERKYEEAFTM ALQRSDVSIV SWLCTQVDLR VICSTGQPLP LSQGVLLALV QQLACDIGHE TSRKVGWMTD VAVAINPADP MIALHVRPIF EQVYNMLGHQ
1301: MAFPTTSASE AASVRLLMHV INSVLTTCK

Best Arabidopsis Sequence Match ( AT3G13300.1 )
(BLAST)

0001: MASSPGNTNP HNTPPFDLGI LFKPSSNPYP PPAASYPPPT GPFLHNQYDQ QHYAPPGISA QPSPVTQQQQ DVSSSSAATN LHPQRTLSYP TPPLNLQSPR
0101: SNHNPGTHIL ALLNNTNNGA PVANQEPSHQ LPVVNHNEIA RSFPGGSGPI RVPSCKLPKG RRLIGEHAVY DVDVRLQGEI QPQLEVTPIT KYGSDPQLVV
0201: GRQIAVNKVY ICYGLKGGNI RVLNINTALR SLFRGHSQRV TDMAFFAEDV DMLASVSLDG KVFVWKISEG SEGEDQPQIT GKIVLALQIL GEEDTKHPRV
0301: CWHCHKQEIL VVSIGKHVLR IDTTKVGRGE VFSAEAPLQC PLDKLIDGVQ IVGKHDGEVT DLSMCQWMTT RLVSSSVDGT IKIWQDRKAQ PLVVLRPHDG
0401: HPVSSATFVT SPERPDHIIL ITGGPLNREM KIWVSAGEEG WLLPADAESW RCTQTLDLKS STEPRAEEAF FNQVIALSEA GLLLLANAKR NALYAVHLDY
0501: GSSPVGTRMD YLSEFTVTMP ILSFIGTNDP PEEPIVKVYC VQTLAIQQYT LDLCLCLPPP IENMGLEKSD SSVSREANLV EGMSEPSGLK PTDLPSVDSV
0601: PKPSIIVNRS ESANKLSFPS AEATSQAIVP PNGEPKTSGL PSQTSGAGSA YATLPQLPLS PRLSSKLSGY HTPVEAIEPV IPHHELGGKT PSADYSVDRQ
0701: MDAVGERNLD VSSVEEISRS KDSNVTPDDD VSGMRSPSAF FKHPTHLVTP SEILMGVSSA EASITTEDRR DRDANIQDVN NDPRDTEVEV KEISEARSTQ
0801: NGEINDHDET ENCTSENREK VFCSQVSNLS TEMARDCYPS TEGTFIPGES KAYGQPIKAG DESGVDSRGG PAKLLKGKKQ KAKNSQGPGL SSTSSNVANL
0901: ADSFNEQSQS LSHPMTDLLP QLLAMQETMN QVMASQKEMQ RQLSNAATGP IGKESKRLEV ALGRMIEKSS KSNADALWAR IQEETVKNEK ALRDHAQQIV
1001: NATTNFMSKE LNAMFEKTIK KELAAIGPAL ARSVVPVIEK TVSSAITESF QRGIGDKAVN QLDKSVNIKL EATVARQIQA QFQTSGKQAL QEGLRSSVES
1101: SVIPSFEKAC KAMFDQIDSA FQKGIAEHTN AAQQRFDSGH SQLAHTLKES ITSASSVAQA LSRELAETQR NLLALAAAGA NSGGSNSLVT QLSGGPLGAL
1201: LEKVEAPMDP TTELSRLISE RKYEESFTSA LQRSDVSIVS WLCSQVDLRG LLAMNPLPLS QGVLLSLLQQ LACDISKDTS RKLAWMTDVV AAINPSDQMI
1301: AVHARPIFEQ VYQILHHHRN APGSDVSAIR LIMHVINSML MGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.