Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
23128297
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G314800.3 | Wheat | plastid | 97.55 | 91.15 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 94.32 | 90.46 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 93.61 | 85.45 |
| EES05610 | Sorghum | plastid | 76.32 | 72.33 |
| Os02t0722800-01 | Rice | plasma membrane | 76.24 | 72.14 |
| Zm00001d017883_P002 | Maize | plastid | 74.11 | 68.74 |
| Zm00001d051678_P001 | Maize | cytosol | 73.24 | 66.91 |
| TraesCS7A01G220400.4 | Wheat | plastid | 64.33 | 62.36 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 52.96 | 56.2 |
| Solyc03g071660.1.1 | Tomato | cytosol | 7.66 | 51.87 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 49.64 | 51.6 |
| Zm00001d008821_P001 | Maize | extracellular | 5.68 | 50.7 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 48.86 | 50.61 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.55 | 50.56 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 52.17 | 49.74 |
| KRH63269 | Soybean | cytosol | 6.24 | 49.38 |
| VIT_00s2472g00010.t01 | Wine grape | cytosol, peroxisome | 5.92 | 49.02 |
| Solyc11g032180.1.1 | Tomato | cytosol | 3.55 | 48.91 |
| Solyc07g021140.1.1 | Tomato | cytosol | 4.97 | 48.09 |
| VIT_00s0455g00020.t01 | Wine grape | plastid | 50.99 | 47.05 |
| Zm00001d048003_P001 | Maize | extracellular | 6.16 | 45.88 |
| VIT_00s1618g00010.t01 | Wine grape | cytosol | 14.05 | 45.88 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 49.88 | 45.11 |
| KRG98417 | Soybean | cytosol | 39.54 | 44.89 |
| CDY44010 | Canola | plastid | 43.41 | 44.39 |
| KRH46493 | Soybean | plastid | 47.04 | 44.28 |
| Bra034693.1-P | Field mustard | cytosol | 40.17 | 44.15 |
| CDY23580 | Canola | plastid | 41.04 | 43.01 |
| Zm00001d002560_P001 | Maize | mitochondrion | 16.1 | 42.86 |
| CDY23587 | Canola | plastid | 43.49 | 42.71 |
| KRH11647 | Soybean | endoplasmic reticulum | 47.2 | 42.56 |
| AT3G13290.1 | Thale cress | cytosol | 44.51 | 42.09 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 44.12 | 42.03 |
| KRH36660 | Soybean | endoplasmic reticulum | 46.65 | 42.0 |
| AT3G13300.1 | Thale cress | cytosol | 44.51 | 41.96 |
| Solyc07g065950.2.1 | Tomato | plastid | 46.01 | 41.44 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.5 | 41.3 |
| Solyc10g005920.2.1 | Tomato | plastid | 45.94 | 41.04 |
| CDY44011 | Canola | plastid | 41.59 | 41.04 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 3.95 | 40.98 |
| KRH46495 | Soybean | cytosol | 19.81 | 40.75 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.31 | 40.38 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 10.42 | 40.37 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 5.92 | 28.74 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | ncoils:Coil | InterPro:EDC4_WD40 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF16529 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 | PANTHER:PTHR15598:SF6 | SMART:SM00320 | SUPFAM:SSF50978 |
| EnsemblPlantsGene:TraesCS6A01G286100 | EnsemblPlants:TraesCS6A01G286100.3 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:-:517889090..517896871
Molecular Weight (calculated)
137816.0 Da
IEP (calculated)
5.494
GRAVY (calculated)
-0.313
Length
1267 amino acids
Sequence
(BLAST)
(BLAST)
0001: PYLHYPQDPQ PPMPRPVIPF PMPNPNANPN PGANPMAAGG ANPGARLMQL LGSSGSGHLE SAVSMPPPSS EFAAAQPSPL PAMPSAPPAR MLSSTSSKVP
0101: RGRLLGGGDK AVHNVDSRLP GEAQPPQLEV TPITKYTSDP GLVLGRQIAV NRTYIVYGLK LGNIRVLNIN TALRSLLRGH TQRVTDMAFF AEDVHRLASA
0201: SVDGRIYVWR IDEGPDAENK PQITGKIEVA IQIVGDAVAY HPRICWHSHK QELLFVGIRN CVLRIDTTKV GRGRDFSVEE PIKCHLDELI DGVRLVGRHD
0301: GDVTDLSISQ WMTTRLASGS NDGMVKIWDD RKLAPLSILK PHDGQAVYSV AFLTAPERPH HINLITAGPL NREIKIWAST NEEGWLLPSD SETWNCTQTL
0401: ELVSSLEPKV EEAFFNQVAV LPQASIILLA NAKKNAIYAV HVEYGSDPAS TRLDYIADFT VAMPILSLTG THESQPDGEQ VVQVYCVQTM AIQQYGLELS
0501: LCSPPTSDTT SFGRDPAISR VYDTPLEVVG AESSTGTSFT DSYTVGTSSK QSTFDQTAEF DLKPSAPPLT YTEGDGSAHL QSAPLASNTD LTGSGPSVGN
0601: RDKDQSAFDY STSRITEPVA LTRQDTPMPK DNFGKDELRD SHSDVQMLPN PRMMFKVGGN ATHLITPSEI ISGALSAESN QISKSDGAKI QDDSISSPRI
0701: AEVEAKHVDE SKSNHDLELE AVKEAQVVCE NSEKDQNSLE QTVEMISERS VTTDKYSVEE SRSPSDRLVP DHTGAAGENV SNKTVEKPGI SDSSVSREQS
0801: SSYTKDKVFH PQASGQSSPS TSAFNSTESS HEPVSSAYPP IQSSSEVADM LQQLIAMQKD MQKQLGTIVI APIAKEGKRI ETSLGRTMEK SIKASIDALW
0901: ARFLEENTKR EKAERERMQQ MTTLITSSIN KDLPAMLDKL VKKEVSSLGP VVARAMTPII EKSLTSIVAD AVQKAVGDKV VNQLDKSVTA KLEATLARQI
1001: QMQFHTSVKQ TLQDVLRTSF ESLLVPAFEQ SCKTMFEQVD SAFQKGMSEH AVAIQQQVEA AHTPLVLTLK ETITSASSIT QNLTSELLDG NRKILALVTS
1101: GNANAQNTNV LQPNNGPITG PPEVEAPLDP MKELGRLLAE HKFDEAFTVA LQRSDVSIVS WLCSQVDLRG LCTMAPVPLN QGVLLALLQQ LAVDIGTETS
1201: RKIQWMTDVA MAINPTDQVI AIHVRPIFEQ VYAKLAHHRS LPTTSPLDNS NLRLLMHVIN SVLLSYK
0101: RGRLLGGGDK AVHNVDSRLP GEAQPPQLEV TPITKYTSDP GLVLGRQIAV NRTYIVYGLK LGNIRVLNIN TALRSLLRGH TQRVTDMAFF AEDVHRLASA
0201: SVDGRIYVWR IDEGPDAENK PQITGKIEVA IQIVGDAVAY HPRICWHSHK QELLFVGIRN CVLRIDTTKV GRGRDFSVEE PIKCHLDELI DGVRLVGRHD
0301: GDVTDLSISQ WMTTRLASGS NDGMVKIWDD RKLAPLSILK PHDGQAVYSV AFLTAPERPH HINLITAGPL NREIKIWAST NEEGWLLPSD SETWNCTQTL
0401: ELVSSLEPKV EEAFFNQVAV LPQASIILLA NAKKNAIYAV HVEYGSDPAS TRLDYIADFT VAMPILSLTG THESQPDGEQ VVQVYCVQTM AIQQYGLELS
0501: LCSPPTSDTT SFGRDPAISR VYDTPLEVVG AESSTGTSFT DSYTVGTSSK QSTFDQTAEF DLKPSAPPLT YTEGDGSAHL QSAPLASNTD LTGSGPSVGN
0601: RDKDQSAFDY STSRITEPVA LTRQDTPMPK DNFGKDELRD SHSDVQMLPN PRMMFKVGGN ATHLITPSEI ISGALSAESN QISKSDGAKI QDDSISSPRI
0701: AEVEAKHVDE SKSNHDLELE AVKEAQVVCE NSEKDQNSLE QTVEMISERS VTTDKYSVEE SRSPSDRLVP DHTGAAGENV SNKTVEKPGI SDSSVSREQS
0801: SSYTKDKVFH PQASGQSSPS TSAFNSTESS HEPVSSAYPP IQSSSEVADM LQQLIAMQKD MQKQLGTIVI APIAKEGKRI ETSLGRTMEK SIKASIDALW
0901: ARFLEENTKR EKAERERMQQ MTTLITSSIN KDLPAMLDKL VKKEVSSLGP VVARAMTPII EKSLTSIVAD AVQKAVGDKV VNQLDKSVTA KLEATLARQI
1001: QMQFHTSVKQ TLQDVLRTSF ESLLVPAFEQ SCKTMFEQVD SAFQKGMSEH AVAIQQQVEA AHTPLVLTLK ETITSASSIT QNLTSELLDG NRKILALVTS
1101: GNANAQNTNV LQPNNGPITG PPEVEAPLDP MKELGRLLAE HKFDEAFTVA LQRSDVSIVS WLCSQVDLRG LCTMAPVPLN QGVLLALLQQ LAVDIGTETS
1201: RKIQWMTDVA MAINPTDQVI AIHVRPIFEQ VYAKLAHHRS LPTTSPLDNS NLRLLMHVIN SVLLSYK
0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.