Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017883_P002 | Maize | plastid | 83.99 | 85.29 |
| TraesCS6A01G286100.3 | Wheat | golgi | 66.91 | 73.24 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 68.2 | 71.61 |
| TraesCS6B01G314800.3 | Wheat | plastid | 68.93 | 70.5 |
| Os02t0722800-01 | Rice | plasma membrane | 67.7 | 70.13 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 68.42 | 68.37 |
| Zm00001d008821_P001 | Maize | extracellular | 6.27 | 61.27 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 48.16 | 55.95 |
| Zm00001d048003_P001 | Maize | extracellular | 6.63 | 54.12 |
| KRH63269 | Soybean | cytosol | 6.2 | 53.75 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 46.94 | 53.4 |
| VIT_00s2472g00010.t01 | Wine grape | cytosol, peroxisome | 5.84 | 52.94 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 50.4 | 52.6 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 46.07 | 52.25 |
| Zm00001d002560_P001 | Maize | mitochondrion | 17.45 | 50.84 |
| VIT_00s0455g00020.t01 | Wine grape | plastid | 48.31 | 48.8 |
| Solyc03g071660.1.1 | Tomato | cytosol | 6.56 | 48.66 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 47.3 | 46.82 |
| Solyc11g032180.1.1 | Tomato | cytosol | 3.1 | 46.74 |
| CDY44010 | Canola | plastid | 41.67 | 46.65 |
| Solyc07g021140.1.1 | Tomato | cytosol | 4.4 | 46.56 |
| KRH46493 | Soybean | plastid | 44.84 | 46.21 |
| Solyc09g055300.1.1 | Tomato | cytosol | 2.96 | 46.07 |
| CDY23587 | Canola | plastid | 42.03 | 45.19 |
| KRG98417 | Soybean | cytosol | 36.27 | 45.07 |
| VIT_00s1618g00010.t01 | Wine grape | cytosol | 12.47 | 44.59 |
| Bra034693.1-P | Field mustard | cytosol | 36.91 | 44.41 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 42.39 | 44.21 |
| KRH11647 | Soybean | endoplasmic reticulum | 44.77 | 44.2 |
| KRH36660 | Soybean | endoplasmic reticulum | 44.7 | 44.07 |
| AT3G13300.1 | Thale cress | cytosol | 42.61 | 43.97 |
| CDY23580 | Canola | plastid | 38.28 | 43.92 |
| AT3G13290.1 | Thale cress | cytosol | 42.03 | 43.51 |
| Solyc07g065950.2.1 | Tomato | plastid | 43.55 | 42.93 |
| CDY44011 | Canola | plastid | 39.29 | 42.45 |
| KRH46495 | Soybean | cytosol | 18.39 | 41.4 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.1 | 41.35 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.11 | 41.3 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 9.73 | 41.28 |
| Solyc10g005920.2.1 | Tomato | plastid | 42.03 | 41.11 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 3.46 | 39.34 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 5.05 | 26.82 |
Protein Annotations
| Gene3D:1.10.220.100 | EntrezGene:103654004 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | UniProt:A0A1D6Q981 | ProteinID:AQK54951.1 |
| InterPro:EDC4_WD40 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF16529 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 | PANTHER:PTHR15598:SF6 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI000842F587 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | EnsemblPlantsGene:Zm00001d051678 | EnsemblPlants:Zm00001d051678_P001 | EnsemblPlants:Zm00001d051678_T001 | SEG:seg | : |
Description
WD40%2C G-beta domain containing family protein%2C family
Coordinates
chr4:-:166470978..166481012
Molecular Weight (calculated)
150924.0 Da
IEP (calculated)
5.408
GRAVY (calculated)
-0.334
Length
1387 amino acids
Sequence
(BLAST)
(BLAST)
0001: MTSPSENPNP NPNTPFEIGK LFRPTNPMPN ATPNPIFPGV AGGPAPSGPY SYPPVTPPFH RGPYIHYPQD PHAMTRPVVS FPMPNPNLNP NPNANPNAVA
0101: PGPNPGARLM QLLGNSGPTQ FETAVSMPPP TSEFAQLQLL PAMPSAPPAR MLSSTSSKVP RGRLLGTGER AVHDVDSRLP GEAQPPQLEV TPITKYTSDP
0201: GLVLGRQIAV NRTYIVYGLK LGNIRVLNIN TALRSLLRGH TQRVTDMAFF AEDVHRLASA SVDGRIFVWR IDEGPDEENK PQITGKIEIA IQIVGEAEAY
0301: HPRICWHSHK QEILFVGIGN CVLRIDTTKV GRGKDFTVEG PVKCHLEKLI DGVRLVGKHD GGVTDLSISQ WMSTRLASGS KDGTVKIWDD RKQVPLSIFK
0401: PHDGQAVYSV AFLTAPERPN HINLITAGPV NREVKIWAST NEDGWLLPSD SETWKCTQTL ELVSSLEPRV EEAFFNQVAV LHQASLILLA NAKKNSIYAV
0501: HVEYGPDPAS TRLDYIADFT VAMPILSLTG THESQPDGEQ VVQVYCVQTM AIQQYGLELS LCSPPTADST GFGRDPAISR VYEAALEMAG TEPSIGTSCT
0601: DSYSVTALSK QPNVDQSAGN AVAFSYLTLS VNSELVISCD SSAELDLKPS APPLAYSEGD SSMPLPFTAL APKIEVPGSG PAPGTRDIEQ SAFNYTNTTN
0701: RNMERDALKR QDTPMPIRKD ILGKDEPRDG QSNVPMLPNP HMVFQVGGNA TRLVTPSEII SGTLSSAENN DVSESGGENR DVSSGSSWVA EVEPKHIDES
0801: KPDQNLGLEA VKETQIVCEN MAKTSMEQTV EMITKRSVTT DKHSVEESQS SSDRPASDQT CGTDENVLKK FVEMPEKIDY SASREQPSLF TKEKVLHPQT
0901: SGQPSPPVSA FNSTEPHEPL SSTYLPVSSF PEDAATQGML QQKDMEKQLS TVVPVSIAKE GKRLETLLGR TVEKSFKANI DAFWVRLQEE NTKREKADRE
1001: RMQQLCTLIT SSINKDLPSN LEKSLKKEIS SLGPVVARAI TPVVEKSITS VVSDSVQKGV GDKVCNQLEK SITGKLEATL AKQIQMQFHT SGRQALQDAL
1101: RTSFESLLVP AFEQACKTMF EQVDGAFQKG MSEHSNAIQQ QVEAAHTPLA LTLKETINSA SSITQSFSSE LLDGNRKLLA LVTSGNAKAH NTSALQPING
1201: PMGGPQEVEA PLDPMRELSR LISERKFDEA FTMALQRSDV SIVSWLCSQV DLRALCAMVP VPLNQGVLLA LLQQLAIDIH NETSRKVQWM TDVAMAINPA
1301: DQIIAVHLGQ FGTNSSCLVL VGPHKILKSH VDIVSGGNCK IGVILIEYSM TVDLTLCDDV ELESNEPGTQ DHQMPTTYLR QHLGIRT
0101: PGPNPGARLM QLLGNSGPTQ FETAVSMPPP TSEFAQLQLL PAMPSAPPAR MLSSTSSKVP RGRLLGTGER AVHDVDSRLP GEAQPPQLEV TPITKYTSDP
0201: GLVLGRQIAV NRTYIVYGLK LGNIRVLNIN TALRSLLRGH TQRVTDMAFF AEDVHRLASA SVDGRIFVWR IDEGPDEENK PQITGKIEIA IQIVGEAEAY
0301: HPRICWHSHK QEILFVGIGN CVLRIDTTKV GRGKDFTVEG PVKCHLEKLI DGVRLVGKHD GGVTDLSISQ WMSTRLASGS KDGTVKIWDD RKQVPLSIFK
0401: PHDGQAVYSV AFLTAPERPN HINLITAGPV NREVKIWAST NEDGWLLPSD SETWKCTQTL ELVSSLEPRV EEAFFNQVAV LHQASLILLA NAKKNSIYAV
0501: HVEYGPDPAS TRLDYIADFT VAMPILSLTG THESQPDGEQ VVQVYCVQTM AIQQYGLELS LCSPPTADST GFGRDPAISR VYEAALEMAG TEPSIGTSCT
0601: DSYSVTALSK QPNVDQSAGN AVAFSYLTLS VNSELVISCD SSAELDLKPS APPLAYSEGD SSMPLPFTAL APKIEVPGSG PAPGTRDIEQ SAFNYTNTTN
0701: RNMERDALKR QDTPMPIRKD ILGKDEPRDG QSNVPMLPNP HMVFQVGGNA TRLVTPSEII SGTLSSAENN DVSESGGENR DVSSGSSWVA EVEPKHIDES
0801: KPDQNLGLEA VKETQIVCEN MAKTSMEQTV EMITKRSVTT DKHSVEESQS SSDRPASDQT CGTDENVLKK FVEMPEKIDY SASREQPSLF TKEKVLHPQT
0901: SGQPSPPVSA FNSTEPHEPL SSTYLPVSSF PEDAATQGML QQKDMEKQLS TVVPVSIAKE GKRLETLLGR TVEKSFKANI DAFWVRLQEE NTKREKADRE
1001: RMQQLCTLIT SSINKDLPSN LEKSLKKEIS SLGPVVARAI TPVVEKSITS VVSDSVQKGV GDKVCNQLEK SITGKLEATL AKQIQMQFHT SGRQALQDAL
1101: RTSFESLLVP AFEQACKTMF EQVDGAFQKG MSEHSNAIQQ QVEAAHTPLA LTLKETINSA SSITQSFSSE LLDGNRKLLA LVTSGNAKAH NTSALQPING
1201: PMGGPQEVEA PLDPMRELSR LISERKFDEA FTMALQRSDV SIVSWLCSQV DLRALCAMVP VPLNQGVLLA LLQQLAIDIH NETSRKVQWM TDVAMAINPA
1301: DQIIAVHLGQ FGTNSSCLVL VGPHKILKSH VDIVSGGNCK IGVILIEYSM TVDLTLCDDV ELESNEPGTQ DHQMPTTYLR QHLGIRT
0001: MASSPGNTNP HNPPPFDLGT IFKPSSNPYP PPTGPFLNNQ YNQQLYAPPG IAAQPSPVNQ TQQDVSSSSS ATNLQPQRTL SYPTPPLNPQ SPRVNHNPGT
0101: HILALLNNGG AVANQEPSHH NEIARAFPGG SGPIHVPSGK MPKGRRLVGE HAVYDVDVRL QGEIQPQLEV TPITKYGSDP QLVLGRQIAV NKVYICYGLK
0201: GGSIRVLNIN TALRSLFRGH SQRVTDMAFF AEDVHLLASV SLDGKVFVWK ISEGSEGDEQ SQITGKIVVA LQILGEEDTK HPRVCWHCHK QEILVVSIGK
0301: HVLRIDTTKV GRGEVFSAEA PLQCHLDKLI DGVQIVGKHD GEVTDLSMCQ WMTTRLVSSS VDGTVKIWQD RKTQPLVVLR PHDGLPVNSA IFVTSPERPD
0401: HIILITGGPL NREIKIWVSA GEEGWLLPAD TESWRCTQTL DLKSSTEPQA EKAFFNQVIA LSEAGLLLLA NARRNAIYSV HLDYGSSPVE TLMDYLSEFT
0501: VTMPILSFIG TNDHPEEPFV KVYCVQTLAI QQYTLDLFLC MPPPRENVGF EKSDSTVSRE ANLVESTLET SGMKPTELPS VGSVPKPSIL VNRSENANML
0601: SFPAGPASAG ITPPAIVPPN GEPKTSGMPS ETSDVDSAYA PSPQLPLSPR LSSKLSGYHT PVEAFEQVLP HHKLGGKTSS ADYFYVRQTD DVGGRNLDVS
0701: SVEENCRSKD TNVTPDDDVS GIRSPSAFFK QPTHLVTPSE ILMGVSSTEA SITTEDKRDR DANIEEVNND ARGLEVELKE VGEAQTSQNG EINYHETTEN
0801: HTSESRENIF CSQASNLSTE MARDRHPITE GSAIPGDSMA YGQPLQAGDE RGLDSRDVSA KLPESGSSSG LVATNSKGKK QKAKNSQGPG LSSTSSNVAN
0901: LADSFNEQSQ SLNHPMADLL PQLLALQETM TQVMASQKEM QRQLSNAVTG PIVKEGKKLE VALGRMIEKS SKSNADALWA HFQEEAVKNE KALRDHGQQI
1001: MNETTNFTSK ELNAMFEKTM KKEFASVGPT LARVVTPVIE KTVSSAITES FQRGIGDKAV NQLEKSVNSK LETTVARQIQ AQFQTSGRQV LQEGLRSSME
1101: SSVIPSFERS CKTMFEQVDS TLQKGIGKHT SATQQRIDSG QSQLAHTLRE TISSASSVTQ ALNRELAESQ RNRLALTAAG SNPLVTQLSN GPLGALLEKV
1201: EAPMDPTTEL SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISTDTSRKLG WMTDVVTAIN PSDQMIAVHA
1301: RPIFEQVYQI LHHHRNAPGS DVSAVRLIMH VINSLLMSCK
0101: HILALLNNGG AVANQEPSHH NEIARAFPGG SGPIHVPSGK MPKGRRLVGE HAVYDVDVRL QGEIQPQLEV TPITKYGSDP QLVLGRQIAV NKVYICYGLK
0201: GGSIRVLNIN TALRSLFRGH SQRVTDMAFF AEDVHLLASV SLDGKVFVWK ISEGSEGDEQ SQITGKIVVA LQILGEEDTK HPRVCWHCHK QEILVVSIGK
0301: HVLRIDTTKV GRGEVFSAEA PLQCHLDKLI DGVQIVGKHD GEVTDLSMCQ WMTTRLVSSS VDGTVKIWQD RKTQPLVVLR PHDGLPVNSA IFVTSPERPD
0401: HIILITGGPL NREIKIWVSA GEEGWLLPAD TESWRCTQTL DLKSSTEPQA EKAFFNQVIA LSEAGLLLLA NARRNAIYSV HLDYGSSPVE TLMDYLSEFT
0501: VTMPILSFIG TNDHPEEPFV KVYCVQTLAI QQYTLDLFLC MPPPRENVGF EKSDSTVSRE ANLVESTLET SGMKPTELPS VGSVPKPSIL VNRSENANML
0601: SFPAGPASAG ITPPAIVPPN GEPKTSGMPS ETSDVDSAYA PSPQLPLSPR LSSKLSGYHT PVEAFEQVLP HHKLGGKTSS ADYFYVRQTD DVGGRNLDVS
0701: SVEENCRSKD TNVTPDDDVS GIRSPSAFFK QPTHLVTPSE ILMGVSSTEA SITTEDKRDR DANIEEVNND ARGLEVELKE VGEAQTSQNG EINYHETTEN
0801: HTSESRENIF CSQASNLSTE MARDRHPITE GSAIPGDSMA YGQPLQAGDE RGLDSRDVSA KLPESGSSSG LVATNSKGKK QKAKNSQGPG LSSTSSNVAN
0901: LADSFNEQSQ SLNHPMADLL PQLLALQETM TQVMASQKEM QRQLSNAVTG PIVKEGKKLE VALGRMIEKS SKSNADALWA HFQEEAVKNE KALRDHGQQI
1001: MNETTNFTSK ELNAMFEKTM KKEFASVGPT LARVVTPVIE KTVSSAITES FQRGIGDKAV NQLEKSVNSK LETTVARQIQ AQFQTSGRQV LQEGLRSSME
1101: SSVIPSFERS CKTMFEQVDS TLQKGIGKHT SATQQRIDSG QSQLAHTLRE TISSASSVTQ ALNRELAESQ RNRLALTAAG SNPLVTQLSN GPLGALLEKV
1201: EAPMDPTTEL SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISTDTSRKLG WMTDVVTAIN PSDQMIAVHA
1301: RPIFEQVYQI LHHHRNAPGS DVSAVRLIMH VINSLLMSCK
Arabidopsis Description
VCRVaricose-related protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.