Factsheet for VIT_00s2472g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d008821_P001	Maize	extracellular	54.25	58.45
Zm00001d048003_P001	Maize	extracellular	50.98	45.88
Zm00001d002560_P001	Maize	mitochondrion	66.01	21.22
VIT_00s0455g00020.t01	Wine grape	plastid	94.77	10.56
GSMUA_Achr3P10880_001	Banana	plastid	74.51	9.55
GSMUA_Achr5P04250_001	Banana	plastid	73.86	9.24
GSMUA_Achr9P19760_001	Banana	plastid	77.12	8.88
GSMUA_Achr3P04200_001	Banana	plastid	68.63	8.61
VIT_19s0015g01380.t01	Wine grape	plastid	77.12	8.42
KRH11647	Soybean	endoplasmic reticulum	75.16	8.19
KRH36660	Soybean	endoplasmic reticulum	74.51	8.1
EES05610	Sorghum	plastid	70.59	8.08
Os02t0722800-01	Rice	plasma membrane	69.93	7.99
Os06t0300800-01	Rice	plasma membrane	69.28	7.95
Zm00001d017883_P002	Maize	plastid	70.59	7.91
TraesCS7D01G221700.1	Wheat	plastid	63.4	7.57
TraesCS7A01G220400.4	Wheat	plastid	64.05	7.5
TraesCS7B01G127000.4	Wheat	plastid	63.4	7.42
TraesCS6A01G286100.3	Wheat	golgi	49.02	5.92
Zm00001d051678_P001	Maize	cytosol	52.94	5.84
TraesCS6D01G266500.2	Wheat	cytosol, plastid	50.33	5.83
TraesCS6B01G314800.3	Wheat	plastid	49.02	5.53
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	49.67	5.48
KRH46495	Soybean	cytosol	13.07	3.25
KRH63269	Soybean	cytosol	1.96	1.88
VIT_03s0091g01220.t01	Wine grape	cytosol	2.61	1.22
VIT_00s1618g00010.t01	Wine grape	cytosol	2.61	1.03
HORVU7Hr1G045240.3	Barley	plastid	2.61	0.5
VIT_03s0091g01230.t01	Wine grape	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.10.220.100	EntrezGene:100853351	wikigene:100853351	MapMan:35.1	ProteinID:CBI38536	ProteinID:CBI38536.3
UniProt:D7U722	EMBL:FN596734	GO:GO:0000932	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0031087	EntrezGene:LOC100853351	wikigene:LOC100853351	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	UniParc:UPI0001BE4CC0
ArrayExpress:VIT_00s2472g00010	EnsemblPlantsGene:VIT_00s2472g00010	EnsemblPlants:VIT_00s2472g00010.t01	RefSeq:XP_003635651	RefSeq:XP_003635651.1	SEG:seg

Description

No Description!

Coordinates

chrUn:+:42100312..42101271

Molecular Weight (calculated)

16791.7 Da

IEP (calculated)

7.511

GRAVY (calculated)

0.280

Length

153 amino acids

Sequence
(BLAST)

001: IKGAIFLKQA EAPLDPTKEL SRLISERKFE EAFTGALHRS DVSIVSWLCS LVDLQGILSL VPLPLSQGVL LALLQQLACD ISKETPRKLA WMTDVAVAIN
101: PGDPMIALHV RPIFEQVYQI LGHQRNQPTT SAAEASSIRL LMHVVNSVLL SCK

Best Arabidopsis Sequence Match ( AT3G13300.2 )
(BLAST)

0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.