CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11647	Soybean	endoplasmic reticulum	87.7	87.83
KRH63269	Soybean	cytosol	9.74	85.62
VIT_00s2472g00010.t01	Wine grape	cytosol, peroxisome	8.1	74.51
VIT_00s0455g00020.t01	Wine grape	plastid	59.2	60.67
Zm00001d008821_P001	Maize	extracellular	5.97	59.15
KRG98417	Soybean	cytosol	44.49	56.09
KRH46493	Soybean	plastid	53.16	55.57
GSMUA_Achr5P04250_001	Banana	plastid	47.69	54.87
Solyc11g032180.1.1	Tomato	cytosol	3.55	54.35
GSMUA_Achr3P10880_001	Banana	plastid	46.06	54.27
VIT_00s1618g00010.t01	Wine grape	cytosol	14.85	53.87
GSMUA_Achr3P04200_001	Banana	plastid	46.13	53.24
GSMUA_Achr9P19760_001	Banana	plastid	49.04	51.92
Zm00001d048003_P001	Maize	extracellular	6.18	51.18
TraesCS7B01G127000.4	Wheat	plastid	46.41	49.92
TraesCS7D01G221700.1	Wheat	plastid	45.34	49.77
TraesCS7A01G220400.4	Wheat	plastid	46.13	49.66
Os02t0722800-01	Rice	plasma membrane	47.05	49.44
EES05610	Sorghum	plastid	46.48	48.92
Os06t0300800-01	Rice	plasma membrane	46.2	48.73
Zm00001d017883_P002	Maize	plastid	46.48	47.88
TraesCS6A01G286100.3	Wheat	golgi	42.0	46.65
TraesCS6D01G266500.2	Wheat	cytosol, plastid	43.0	45.8
HORVU7Hr1G045240.3	Barley	plastid	26.01	45.64
TraesCS6B01G314800.3	Wheat	plastid	43.5	45.13
Zm00001d051678_P001	Maize	cytosol	44.07	44.7
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	43.71	44.31
KRH46495	Soybean	cytosol	18.83	43.02
Zm00001d002560_P001	Maize	mitochondrion	13.22	39.08

Protein Annotations

Gene3D:1.10.220.100	EntrezGene:100778070	MapMan:16.8.2.2.4	Gene3D:2.130.10.10	EMBL:ACUP02005387	ncoils:Coil
InterPro:EDC4_WD40	EnsemblPlantsGene:GLYMA_09G016800	GO:GO:0000932	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0031087	UniProt:I1L069	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH36660	ProteinID:KRH36660	ProteinID:KRH36660.1	PFAM:PF16529
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002337D32	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:1300622..1311603

Molecular Weight (calculated)

152997.0 Da

IEP (calculated)

6.196

GRAVY (calculated)

-0.437

Length

1407 amino acids

Sequence
(BLAST)

0001: MASSSGNPNQ QQQPQPQQLQ QQNFDFNKLF KAPTTSSPSI PNPSNLNSSP SFPAPSPSTP PPSSYPTPSS SYPPPTGTYP YHHPHFLPYP ALHHHHHQQQ
0101: QQQHQEHPLI LHHLPQMHAP QRPSIFQPSS PSPSSPHLPS SPNPPTGARL MALLGTQNPP SNQEPSSVVY SSPSPSPVVS DFSVPPASTQ QPSGSPVNLA
0201: SPQSTPTRML STKLPKGRHL IGEHAVYDID ARVPGEVQPQ LEVTPITKYA SDPGLVLGRQ IAVNKSYICY GLKLGAIRVL NINTALRYLL RGHTQRVTDM
0301: AFFAEDLHLL ASASTDGRIF VWKINEGPDE DDKPQITGKV ILALQILGES ESVHPRVCWH PHKQEILMVA IGNRILKIDS MRAGKGKFFS AEEPLKCSID
0401: KLIDGVQLVG KHDGNVTELS MCQWMKSRLA SASADGTVKI WEERKATPLA VIRPHDGKPV NSVTFLTAPH RPEHIVLITA GPLNQEVKIW VSDNEEGWLL
0501: PSDSESWNCI QTLDIRSSFE ANPEDAFFNQ VVALSRAGLY LLANAKKNTI YAVHIEYGSN PTATRMDYIA EFTVTMPILS LTGTSDSLPD GEHIVQIYCV
0601: QTQAIQQYGL NLSQCLPPPL DNVELEKTES HLSRAFDALD GSMETGNMPQ VLCGSSESAP VVSVAVNLPS SDISGLPEAS ISSISDSETK SNDLPPRNGF
0701: ELVHSASPPL PQSPRLSPKL SGLKNSSNNL ETSSTSADHS SEQTNLDSSA EQKVESKKDM ADVPGSGDNL RKDDKVVQSD VSVVSNAPTT YKHPTHLVTP
0801: SEIFSNAALS SDNSHNSQGM NGQDVAAHRD AENSQVDVEV VGETDSIQEN TEYERDRDSH TNVAEKKEKL FYSQASDLGI QMARETYNIE GACQADNIKT
0901: INAPDQSGNS VEEEIQDTSK DVPANISESE TVAAAVQSPA PSVKGKRQKG KNSHVSGASS TSPSPFNSTD SSNDQGGNSG GSSMEAALPQ LFAMQEMMSQ
1001: LLSMNKEMQK QMNAMVSVPV TKEGKRLEGS LGRNMEKVVK AHTDALWARL QEENAKQEKL ERDRTQQITN LISNYVNKDM VSILEKIIKK EISSIGTTIT
1101: RSISQVIEKT ISSAITESFQ KGVGDKALNQ LEKSVSSKLE ATVARQIQAQ FQTSGKQALQ EALKTSVEAS VVPAFEMSCK ALFEQIDIKF QNGLVKHTTA
1201: IQQQFDSTHS PLAMTLRDTI NSASSITQTL SGQLADGQRK LLAIATNSKV AADPFVAQIN NGLHEMTEDP TKELSRLISE GKFEEAFTGA LHRSDVSIVS
1301: WLCSQVDLAR ILAMVPLPLS QGVLLSLLQQ LSCDINTETP KKLTWMTDVA AAINPADPRI AAHVRQILDQ VSRTLGHHRI LPTTSPSEAS TIRLLMHVIN
1401: SVLLSCK

Best Arabidopsis Sequence Match ( AT3G13300.2 )
(BLAST)

0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.