Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s2472g00010.t01 | Wine grape | cytosol, peroxisome | 10.56 | 94.77 |
| VIT_00s1618g00010.t01 | Wine grape | cytosol | 26.0 | 92.01 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 65.26 | 63.95 |
| Zm00001d008821_P001 | Maize | extracellular | 6.41 | 61.97 |
| KRH63269 | Soybean | cytosol | 7.06 | 60.62 |
| KRH11647 | Soybean | endoplasmic reticulum | 60.96 | 59.57 |
| KRH36660 | Soybean | endoplasmic reticulum | 60.67 | 59.2 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 51.27 | 58.96 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 52.15 | 58.54 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 51.35 | 57.83 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 53.9 | 55.68 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 13.04 | 54.74 |
| Os02t0722800-01 | Rice | plasma membrane | 52.08 | 53.4 |
| Zm00001d048003_P001 | Maize | extracellular | 6.55 | 52.94 |
| EES05610 | Sorghum | plastid | 51.35 | 52.73 |
| TraesCS7A01G220400.4 | Wheat | plastid | 49.6 | 52.1 |
| TraesCS7D01G221700.1 | Wheat | plastid | 48.58 | 52.03 |
| Os06t0300800-01 | Rice | plasma membrane | 50.55 | 52.02 |
| TraesCS7B01G127000.4 | Wheat | plastid | 49.53 | 51.99 |
| Zm00001d017883_P002 | Maize | plastid | 51.64 | 51.9 |
| TraesCS6A01G286100.3 | Wheat | golgi | 47.05 | 50.99 |
| TraesCS6D01G266500.2 | Wheat | cytosol, plastid | 48.0 | 49.89 |
| TraesCS6B01G314800.3 | Wheat | plastid | 48.22 | 48.82 |
| HORVU7Hr1G045240.3 | Barley | plastid | 28.48 | 48.75 |
| Zm00001d051678_P001 | Maize | cytosol | 48.8 | 48.31 |
| HORVU6Hr1G071910.3 | Barley | cytosol, nucleus, plastid | 48.36 | 47.84 |
| KRH46495 | Soybean | cytosol | 21.05 | 46.92 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 8.59 | 45.21 |
| Zm00001d002560_P001 | Maize | mitochondrion | 14.13 | 40.76 |
Protein Annotations
| Gene3D:1.10.220.100 | EntrezGene:100241190 | wikigene:100241190 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | ProteinID:CCB45297 |
| ProteinID:CCB45297.1 | ncoils:Coil | InterPro:EDC4_WD40 | UniProt:F6GZB1 | EMBL:FN595005 | GO:GO:0000932 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 |
| GO:GO:0031087 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | EntrezGene:LOC100241190 | wikigene:LOC100241190 |
| PFAM:PF16529 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR15598 | PANTHER:PTHR15598:SF7 | SMART:SM00320 |
| SUPFAM:SSF50978 | TIGR:TC53274 | TIGR:TC56645 | UniParc:UPI000210899B | ArrayExpress:VIT_00s0455g00020 | EnsemblPlantsGene:VIT_00s0455g00020 |
| EnsemblPlants:VIT_00s0455g00020.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002269564 |
| RefSeq:XP_002269564.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrUn:+:29519461..29541598
Molecular Weight (calculated)
148490.0 Da
IEP (calculated)
6.069
GRAVY (calculated)
-0.239
Length
1373 amino acids
Sequence
(BLAST)
(BLAST)
0001: MANQAGGPSD LHKLFKPSSN PGPATIIQPS PSSPSPNLQP YATPSPSSSS SSYPPPTGPL PFHTHYLPYQ PQPQPLPISY QTSQQQPHLP SPSPNSGARL
0101: MALLTTPSNP PMPFPATAPP EFSMPTTTPI NLVTPQPPPL RLLSNKFPKG RHLIGDRVVY DVDVRLQGEV QPQLEVTPIT KYVSDPGLVV GRQIAVNRTY
0201: ICYGLKLGNI RVLNINTALR ALLRGHTQRV TDMAFFAEDV PLLASASIDG LVFIWRINEG PNEDDKAHIT GKIVIAIQIV GGGTSVHPRV CWHSHKQEIL
0301: VVAIGNRILK IDSTKVGKGE VFSAEEPLKC PIDKLIDGVQ FVGKHDGEVT ELSMCQWMTT RLASASTDGT VKIWEDRKLV PLAVLRPHDG QPVNSVTFLT
0401: APHRPDHIIL ITAGPLNREV KLWASASDEG WLLPSDIESW QCTQTLDLRS SAESRAEDAF FNQVVALPRA GLFLLANAKK NAMYAVHIEY GPYPAATRLD
0501: YIAEFTVTMP ILSLTGTSDS LPDGEHVVQV YCVQTHAIQQ YALDLSQCLP PPLENLELEK TDSSTSCGFN AANSAACDTL ELSHGSKHIE MSVGGATPLP
0601: SILSSSSENG PIASHPVNLA SSEVTSLRET ATSGMESKSS ALPSSISSEN IHAASPPLPL SPRLSGKLSG FRSPSNSFDP SPPLSNHGGD QPILDYSIDR
0701: RMDTVRENFA DAPPSGENLR KDEKNIAQND ISMVPNPPIM FKHPTHLITP SEILSASSES SQITQGMNVG EAKIHDMVVN NDPESIELEV KVVGETGIPG
0801: ISKNDELECQ RESHVIVAEK KEKSFCSQAS DLSIQMTRDC CVETYTIEGA RQVSDANVTA AVDLSPNTAD EDVQDSTRDV SAKMGESTTP MIVPQSSIPS
0901: KGKKQKGKNS QVSGPSSPSP SPFNSTDSSN EPSSSSSPPS MDAAFSQLFS MQEMLDQLVN MQKEMQKQMN VMVAVPVTKE SRRLEASLGR SMEKVVKANS
1001: DALWARFQEE NTKHEKLDRD RMQQLTNLIT NCINKDLPSM LEKTIKKEIA AVGPAVARAI TPVIEKTISS AISESFQKGL GDKVVNQLEK LVNSKLESAM
1101: ARQIQIQFQT SGKQALQDAL RSTLEAAVIP AFEIACKTMF DQVDSTFQKG LIKHTSGVQQ QFESTHSTLA VALRDAINSA SSITKTLSGE LADGQRQILA
1201: IAAAGANSKA VNPLVTQLSN GPLAGLHEMA EAPLDPTKEL SRLISERKFE EAFTGALHRS DVSIVSWLCS LVDLQGILSL VPLPLSQGVL LALLQQLACD
1301: ISKETPRKLA WMTDVAVAIN PADPMIALHV RPIFEQVYQI LGHQRNLPTT SAAEASSIRL LMHVVNSVLL SCK
0101: MALLTTPSNP PMPFPATAPP EFSMPTTTPI NLVTPQPPPL RLLSNKFPKG RHLIGDRVVY DVDVRLQGEV QPQLEVTPIT KYVSDPGLVV GRQIAVNRTY
0201: ICYGLKLGNI RVLNINTALR ALLRGHTQRV TDMAFFAEDV PLLASASIDG LVFIWRINEG PNEDDKAHIT GKIVIAIQIV GGGTSVHPRV CWHSHKQEIL
0301: VVAIGNRILK IDSTKVGKGE VFSAEEPLKC PIDKLIDGVQ FVGKHDGEVT ELSMCQWMTT RLASASTDGT VKIWEDRKLV PLAVLRPHDG QPVNSVTFLT
0401: APHRPDHIIL ITAGPLNREV KLWASASDEG WLLPSDIESW QCTQTLDLRS SAESRAEDAF FNQVVALPRA GLFLLANAKK NAMYAVHIEY GPYPAATRLD
0501: YIAEFTVTMP ILSLTGTSDS LPDGEHVVQV YCVQTHAIQQ YALDLSQCLP PPLENLELEK TDSSTSCGFN AANSAACDTL ELSHGSKHIE MSVGGATPLP
0601: SILSSSSENG PIASHPVNLA SSEVTSLRET ATSGMESKSS ALPSSISSEN IHAASPPLPL SPRLSGKLSG FRSPSNSFDP SPPLSNHGGD QPILDYSIDR
0701: RMDTVRENFA DAPPSGENLR KDEKNIAQND ISMVPNPPIM FKHPTHLITP SEILSASSES SQITQGMNVG EAKIHDMVVN NDPESIELEV KVVGETGIPG
0801: ISKNDELECQ RESHVIVAEK KEKSFCSQAS DLSIQMTRDC CVETYTIEGA RQVSDANVTA AVDLSPNTAD EDVQDSTRDV SAKMGESTTP MIVPQSSIPS
0901: KGKKQKGKNS QVSGPSSPSP SPFNSTDSSN EPSSSSSPPS MDAAFSQLFS MQEMLDQLVN MQKEMQKQMN VMVAVPVTKE SRRLEASLGR SMEKVVKANS
1001: DALWARFQEE NTKHEKLDRD RMQQLTNLIT NCINKDLPSM LEKTIKKEIA AVGPAVARAI TPVIEKTISS AISESFQKGL GDKVVNQLEK LVNSKLESAM
1101: ARQIQIQFQT SGKQALQDAL RSTLEAAVIP AFEIACKTMF DQVDSTFQKG LIKHTSGVQQ QFESTHSTLA VALRDAINSA SSITKTLSGE LADGQRQILA
1201: IAAAGANSKA VNPLVTQLSN GPLAGLHEMA EAPLDPTKEL SRLISERKFE EAFTGALHRS DVSIVSWLCS LVDLQGILSL VPLPLSQGVL LALLQQLACD
1301: ISKETPRKLA WMTDVAVAIN PADPMIALHV RPIFEQVYQI LGHQRNLPTT SAAEASSIRL LMHVVNSVLL SCK
0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK
Arabidopsis Description
VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.