Factsheet for VIT_00s1618g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0091g01230.t01	Wine grape	nucleus	21.91	32.57
KRH46495	Soybean	cytosol	46.65	29.38
VIT_00s0455g00020.t01	Wine grape	plastid	92.01	26.0
HORVU7Hr1G045240.3	Barley	plastid	42.53	20.57
VIT_19s0015g01380.t01	Wine grape	plastid	61.6	17.06
KRH11647	Soybean	endoplasmic reticulum	54.9	15.16
GSMUA_Achr3P10880_001	Banana	plastid	46.39	15.08
KRH36660	Soybean	endoplasmic reticulum	53.87	14.85
GSMUA_Achr5P04250_001	Banana	plastid	46.65	14.8
GSMUA_Achr3P04200_001	Banana	plastid	45.88	14.6
TraesCS6A01G286100.3	Wheat	golgi	45.88	14.05
Os06t0300800-01	Rice	plasma membrane	47.16	13.72
TraesCS7D01G221700.1	Wheat	plastid	44.85	13.57
TraesCS6D01G266500.2	Wheat	cytosol, plastid	45.88	13.47
Os02t0722800-01	Rice	plasma membrane	45.88	13.29
TraesCS7B01G127000.4	Wheat	plastid	44.59	13.23
TraesCS6B01G314800.3	Wheat	plastid	46.13	13.2
EES05610	Sorghum	plastid	45.36	13.16
Zm00001d017883_P002	Maize	plastid	46.13	13.1
TraesCS7A01G220400.4	Wheat	plastid	44.07	13.08
HORVU6Hr1G071910.3	Barley	cytosol, nucleus, plastid	46.65	13.04
GSMUA_Achr9P19760_001	Banana	plastid	44.33	12.94
Zm00001d051678_P001	Maize	cytosol	44.59	12.47
VIT_00s2472g00010.t01	Wine grape	cytosol, peroxisome	1.03	2.61
Zm00001d002560_P001	Maize	mitochondrion	3.09	2.52
VIT_03s0091g01220.t01	Wine grape	cytosol	1.55	1.83
KRH63269	Soybean	cytosol	0.52	1.25
Solyc11g032180.1.1	Tomato	cytosol	0.26	1.09
Zm00001d008821_P001	Maize	extracellular	0.26	0.7
Zm00001d048003_P001	Maize	extracellular	0.26	0.59

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	ProteinID:CCB61147	ProteinID:CCB61147.1	InterPro:EDC4_WD40	UniProt:F6I2I0
EMBL:FN596644	GO:GO:0000932	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0031087	InterPro:IPR001680	InterPro:IPR015943	PFAM:PF16529
PFscan:PS50082	PANTHER:PTHR15598	PANTHER:PTHR15598:SF7	SUPFAM:SSF50978	UniParc:UPI0002109EBD	ArrayExpress:VIT_00s1618g00010
EnsemblPlantsGene:VIT_00s1618g00010	EnsemblPlants:VIT_00s1618g00010.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrUn:-:39857122..39862035

Molecular Weight (calculated)

42051.6 Da

IEP (calculated)

5.089

GRAVY (calculated)

-0.252

Length

388 amino acids

Sequence
(BLAST)

001: MCQWMTTRLA SASTDGTVKI WEDRKLVPLA VLRPHDGQPV NSVTFLTAPH RPDHIILITA GPLNREVKLW ASASDEGWLL PSDIESWQCT QTLDLRSSAE
101: PRAEDAFFNQ VVALPRAGLF LLANAKKNAM YAVHIEYGPY PAATRLDYIA EFTVTMPILS LTGTSDSLPD GEHVVQVYCV QTHAIQQYAL DLSQCLPPPL
201: ENLELEKTDS STSCGFNTAN SAACDTLELS HGSKHIEMSV GGATPLPSIL SSSSENGPIA SHPVNLASSE VTSLRETATS GMESKSSALP SSISSENIHA
301: ASPPLPLSPR LSGKLSGFRS PSNSFDPSPP LSNHGGDQPI LDYSIDRRMD TVRENFADAP PSVENLRKDE KNIAQNDISM RVLRLLRV

Best Arabidopsis Sequence Match ( AT3G13300.2 )
(BLAST)

0001: MASSPGPFLH NQYDQQHYAP PGISAQPSPV TQQQQDVSSS SAATNLHPQR TLSYPTPPLN LQSPRSNHNP GTHILALLNN TNNGAPVANQ EPSHQLPVVN
0101: HNEIARSFPG GSGPIRVPSC KLPKGRRLIG EHAVYDVDVR LQGEIQPQLE VTPITKYGSD PQLVVGRQIA VNKVYICYGL KGGNIRVLNI NTALRSLFRG
0201: HSQRVTDMAF FAEDVDMLAS VSLDGKVFVW KISEGSEGED QPQITGKIVL ALQILGEEDT KHPRVCWHCH KQEILVVSIG KHVLRIDTTK VGRGEVFSAE
0301: APLQCPLDKL IDGVQIVGKH DGEVTDLSMC QWMTTRLVSS SVDGTIKIWQ DRKAQPLVVL RPHDGHPVSS ATFVTSPERP DHIILITGGP LNREMKIWVS
0401: AGEEGWLLPA DAESWRCTQT LDLKSSTEPR AEEAFFNQVI ALSEAGLLLL ANAKRNALYA VHLDYGSSPV GTRMDYLSEF TVTMPILSFI GTNDPPEEPI
0501: VKVYCVQTLA IQQYTLDLCL CLPPPIENMG LEKSDSSVSR EANLVEGMSE PSGLKPTDLP SVDSVPKPSI IVNRSESANK LSFPSAEATS QAIVPPNGEP
0601: KTSGLPSQTS GAGSAYATLP QLPLSPRLSS KLSGYHTPVE AIEPVIPHHE LGGKTPSADY SVDRQMDAVG ERNLDVSSVE EISRSKDSNV TPDDDVSGMR
0701: SPSAFFKHPT HLVTPSEILM GVSSAEASIT TEDRRDRDAN IQDVNNDPRD TEVEVKEISE ARSTQNGEIN DHDETENCTS ENREKVFCSQ VSNLSTEMAR
0801: DCYPSTEGTF IPGESKAYGQ PIKAGDESGV DSRGGPAKLL KGKKQKAKNS QGPGLSSTSS NVANLADSFN EQSQSLSHPM TDLLPQLLAM QETMNQVMAS
0901: QKEMQRQLSN AATGPIGKES KRLEVALGRM IEKSSKSNAD ALWARIQEET VKNEKALRDH AQQIVNATTN FMSKELNAMF EKTIKKELAA IGPALARSVV
1001: PVIEKTVSSA ITESFQRGIG DKAVNQLDKS VNIKLEATVA RQIQAQFQTS GKQALQEGLR SSVESSVIPS FEKACKAMFD QIDSAFQKGI AEHTNAAQQR
1101: FDSGHSQLAH TLKESITSAS SVAQALSREL AETQRNLLAL AAAGANSGGS NSLVTQLSGG PLGALLEKVE APMDPTTELS RLISERKYEE SFTSALQRSD
1201: VSIVSWLCSQ VDLRGLLAMN PLPLSQGVLL SLLQQLACDI SKDTSRKLAW MTDVVAAINP SDQMIAVHAR PIFEQVYQIL HHHRNAPGSD VSAIRLIMHV
1301: INSMLMGCK

Arabidopsis Description

VCSEnhancer of mRNA-decapping protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.