Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G127000.4 | Wheat | plastid | 75.86 | 77.37 |
| TraesCS7D01G221700.1 | Wheat | plastid | 74.14 | 77.15 |
| TraesCS7A01G220400.4 | Wheat | plastid | 75.56 | 77.12 |
| HORVU7Hr1G045240.3 | Barley | plastid | 42.05 | 69.95 |
| VIT_00s2472g00010.t01 | Wine grape | cytosol, peroxisome | 7.95 | 69.28 |
| Os02t0722800-01 | Rice | plasma membrane | 67.09 | 66.84 |
| GSMUA_Achr3P10880_001 | Banana | plastid | 52.02 | 58.12 |
| GSMUA_Achr5P04250_001 | Banana | plastid | 51.27 | 55.93 |
| GSMUA_Achr3P04200_001 | Banana | plastid | 50.15 | 54.88 |
| GSMUA_Achr9P19760_001 | Banana | plastid | 54.2 | 54.4 |
| KRH63269 | Soybean | cytosol | 6.37 | 53.12 |
| Solyc03g071660.1.1 | Tomato | cytosol | 7.2 | 51.34 |
| VIT_00s0455g00020.t01 | Wine grape | plastid | 52.02 | 50.55 |
| VIT_19s0015g01380.t01 | Wine grape | plastid | 51.05 | 48.61 |
| KRH46493 | Soybean | plastid | 48.5 | 48.07 |
| CDY44010 | Canola | plastid | 44.38 | 47.78 |
| Bra034693.1-P | Field mustard | cytosol | 41.0 | 47.44 |
| CDY23580 | Canola | plastid | 42.8 | 47.23 |
| Solyc09g055300.1.1 | Tomato | cytosol | 3.15 | 47.19 |
| VIT_00s1618g00010.t01 | Wine grape | cytosol | 13.72 | 47.16 |
| KRG98417 | Soybean | cytosol | 39.43 | 47.13 |
| Solyc07g021140.1.1 | Tomato | cytosol | 4.57 | 46.56 |
| KRH11647 | Soybean | endoplasmic reticulum | 48.88 | 46.41 |
| AT3G13300.1 | Thale cress | cytosol | 46.7 | 46.35 |
| KRH36660 | Soybean | endoplasmic reticulum | 48.73 | 46.2 |
| CDY23587 | Canola | plastid | 44.6 | 46.12 |
| Bra034692.1-P | Field mustard | cytosol, plastid | 45.43 | 45.56 |
| AT3G13290.1 | Thale cress | cytosol | 45.65 | 45.45 |
| CDY44011 | Canola | plastid | 43.7 | 45.41 |
| Solyc10g005920.2.1 | Tomato | plastid | 47.08 | 44.29 |
| Solyc07g065950.2.1 | Tomato | plastid | 46.4 | 43.99 |
| Solyc11g032180.1.1 | Tomato | cytosol | 2.92 | 42.39 |
| VIT_03s0091g01220.t01 | Wine grape | cytosol | 10.19 | 41.59 |
| Solyc11g039850.1.1 | Tomato | cytosol | 3.22 | 41.35 |
| KRH46495 | Soybean | cytosol | 18.74 | 40.58 |
| Solyc02g005370.1.1 | Tomato | cytosol | 4.2 | 40.58 |
| Solyc12g062490.1.1 | Tomato | nucleus, plastid | 3.6 | 39.34 |
| VIT_03s0091g01230.t01 | Wine grape | nucleus | 4.87 | 24.9 |
Protein Annotations
| Gene3D:1.10.220.100 | MapMan:16.8.2.2.4 | Gene3D:2.130.10.10 | EntrezGene:4340825 | ProteinID:BAD53491.1 | ProteinID:BAS97379.1 |
| ncoils:Coil | InterPro:EDC4_WD40 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0031087 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | EnsemblPlantsGene:Os06g0300800 | EnsemblPlants:Os06t0300800-01 | PFAM:PF16529 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR15598 | PANTHER:PTHR15598:SF6 | UniProt:Q5ZA32 | SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0000446D6D |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_015643577.1 | SEG:seg |
Description
OsWD40-128Hypothetical conserved gene. (Os06t0300800-01);WD40 repeat-like domain containing protein. (Os06t0300800-02)
Coordinates
chr6:+:11219921..11228576
Molecular Weight (calculated)
144149.0 Da
IEP (calculated)
6.433
GRAVY (calculated)
-0.349
Length
1334 amino acids
Sequence
(BLAST)
(BLAST)
0001: MASPSGNPNP TPNQPFELNR LFKQHPPASA SASAAPNPNH HPAPAGIFPG AAAPAPHHGV VVPPPMTSGG GPYSYPPATP PFHRGPYLPP YPNDPHLAFA
0101: GNPNPPAAAA APNPAGARLM QLLGNTAPTH LESAVSMPMP SEFSAAAAVA PPAPLPAMPS APPARMPSSS SSKMPRGRLL GPGDRAVHDV DSRLPGEAQP
0201: PQLEVTPITK YTSDPGLVLG RQIAVNRTYI VYGLKLGNIR VLNINTALRS LLRGHTQRVT DMAFFAEDVH RLASASVDGR IYVWKIDEGP DEQNKPQITG
0301: KIEIAIQIVG DAETYHPRIC WHSHKQEILF VGVANCVLKI DTTKVGRGMD FSREEPLKCP LDKLVDGVHL VGKHDADITD LSLSQWMTTR LASASKDGMV
0401: KIWDDRKSVP LSVLKPHDGQ AVYSVSFLTA PEHPQHINLI TAGPLNREVK IWASTNDEGW LLPSDSETWR CTQTLELVSS LEHRFEEAFF NQVAVLPQAS
0501: LILLANAKKN AIYAVHVEYG PDPASTRLDY IADFTVAMPI LSLTGTHESQ LDTEQIVQVY CVQTMAIQQY GLELSLCLPP TADNPGFGRD PAISHVYERP
0601: PAEVTVVESS KETSLIDSSV VGPTKPASNN QALEANVPSQ VQSTTPPSSI DLGYLEEGAL RRGPSRGPSL GDRDIDPSSL DYSSKKRMDS DGASGQGSFG
0701: RKDSFGKEEP RGSQGDGTKT SDPRPMFKVG GNATHLITPS EIISGVLSSP ETIATGSSQN VEVDAKHVDG RKSERSVELE AVKETQIVHE KRERPPKTAE
0801: QTVNTISERL VTTDKYSVED SQSRSADGSV STLLKHPSGA GDENTVSEAP EKTSDGYASR NLQLTLATKE EKVLHPQVSR QLSPSTSTYN SADSSHEPPS
0901: NVNPPIDNVP QVGIQETLQQ LMAMHSDLQK QLSTIVSAPI AKEGKRIETS LGRNMEKSIK ANIDAMWARF QEENAKHEKA ERERMQHITT LITTAVNKDI
1001: PVMLEKSLKK EISSVGPAVA RTTAPIIEKS LSSAVSDSLQ KVLGDKVVNQ LDKSLSTKLE ATVARQIQTQ FHTSAKQALQ DALRSSFEST IIPAFEQSCK
1101: TMFEQVDGAF QKGMSEHGAA IRQQVATAHT PLAQTLRETI ASASSINQGL ASELLDGQRK LLALVSSGGS LSHNTSVLQP SNGPVASLPE VDAPLDPVKE
1201: LSRLISERKF DEAFTMALQR SDVSIVSWLC SQVDLHELCR MNPIPLNQGV LLALFQQLAC DIVNDTPRKL EWMTAVAVAI SPTDPMIAVH VRPIFEQVYG
1301: VLNHQRSLPA SSSSEATNIR LIMHVINSVL LTYK
0101: GNPNPPAAAA APNPAGARLM QLLGNTAPTH LESAVSMPMP SEFSAAAAVA PPAPLPAMPS APPARMPSSS SSKMPRGRLL GPGDRAVHDV DSRLPGEAQP
0201: PQLEVTPITK YTSDPGLVLG RQIAVNRTYI VYGLKLGNIR VLNINTALRS LLRGHTQRVT DMAFFAEDVH RLASASVDGR IYVWKIDEGP DEQNKPQITG
0301: KIEIAIQIVG DAETYHPRIC WHSHKQEILF VGVANCVLKI DTTKVGRGMD FSREEPLKCP LDKLVDGVHL VGKHDADITD LSLSQWMTTR LASASKDGMV
0401: KIWDDRKSVP LSVLKPHDGQ AVYSVSFLTA PEHPQHINLI TAGPLNREVK IWASTNDEGW LLPSDSETWR CTQTLELVSS LEHRFEEAFF NQVAVLPQAS
0501: LILLANAKKN AIYAVHVEYG PDPASTRLDY IADFTVAMPI LSLTGTHESQ LDTEQIVQVY CVQTMAIQQY GLELSLCLPP TADNPGFGRD PAISHVYERP
0601: PAEVTVVESS KETSLIDSSV VGPTKPASNN QALEANVPSQ VQSTTPPSSI DLGYLEEGAL RRGPSRGPSL GDRDIDPSSL DYSSKKRMDS DGASGQGSFG
0701: RKDSFGKEEP RGSQGDGTKT SDPRPMFKVG GNATHLITPS EIISGVLSSP ETIATGSSQN VEVDAKHVDG RKSERSVELE AVKETQIVHE KRERPPKTAE
0801: QTVNTISERL VTTDKYSVED SQSRSADGSV STLLKHPSGA GDENTVSEAP EKTSDGYASR NLQLTLATKE EKVLHPQVSR QLSPSTSTYN SADSSHEPPS
0901: NVNPPIDNVP QVGIQETLQQ LMAMHSDLQK QLSTIVSAPI AKEGKRIETS LGRNMEKSIK ANIDAMWARF QEENAKHEKA ERERMQHITT LITTAVNKDI
1001: PVMLEKSLKK EISSVGPAVA RTTAPIIEKS LSSAVSDSLQ KVLGDKVVNQ LDKSLSTKLE ATVARQIQTQ FHTSAKQALQ DALRSSFEST IIPAFEQSCK
1101: TMFEQVDGAF QKGMSEHGAA IRQQVATAHT PLAQTLRETI ASASSINQGL ASELLDGQRK LLALVSSGGS LSHNTSVLQP SNGPVASLPE VDAPLDPVKE
1201: LSRLISERKF DEAFTMALQR SDVSIVSWLC SQVDLHELCR MNPIPLNQGV LLALFQQLAC DIVNDTPRKL EWMTAVAVAI SPTDPMIAVH VRPIFEQVYG
1301: VLNHQRSLPA SSSSEATNIR LIMHVINSVL LTYK
0001: MASSPGNTNP HNPPPFDLGT IFKPSSNPYP PPTGPFLNNQ YNQQLYAPPG IAAQPSPVNQ TQQDVSSSSS ATNLQPQRTL SYPTPPLNPQ SPRVNHNPGT
0101: HILALLNNGG AVANQEPSHH NEIARAFPGG SGPIHVPSGK MPKGRRLVGE HAVYDVDVRL QGEIQPQLEV TPITKYGSDP QLVLGRQIAV NKVYICYGLK
0201: GGSIRVLNIN TALRSLFRGH SQRVTDMAFF AEDVHLLASV SLDGKVFVWK ISEGSEGDEQ SQITGKIVVA LQILGEEDTK HPRVCWHCHK QEILVVSIGK
0301: HVLRIDTTKV GRGEVFSAEA PLQCHLDKLI DGVQIVGKHD GEVTDLSMCQ WMTTRLVSSS VDGTVKIWQD RKTQPLVVLR PHDGLPVNSA IFVTSPERPD
0401: HIILITGGPL NREIKIWVSA GEEGWLLPAD TESWRCTQTL DLKSSTEPQA EKAFFNQVIA LSEAGLLLLA NARRNAIYSV HLDYGSSPVE TLMDYLSEFT
0501: VTMPILSFIG TNDHPEEPFV KVYCVQTLAI QQYTLDLFLC MPPPRENVGF EKSDSTVSRE ANLVESTLET SGMKPTELPS VGSVPKPSIL VNRSENANML
0601: SFPAGPASAG ITPPAIVPPN GEPKTSGMPS ETSDVDSAYA PSPQLPLSPR LSSKLSGYHT PVEAFEQVLP HHKLGGKTSS ADYFYVRQTD DVGGRNLDVS
0701: SVEENCRSKD TNVTPDDDVS GIRSPSAFFK QPTHLVTPSE ILMGVSSTEA SITTEDKRDR DANIEEVNND ARGLEVELKE VGEAQTSQNG EINYHETTEN
0801: HTSESRENIF CSQASNLSTE MARDRHPITE GSAIPGDSMA YGQPLQAGDE RGLDSRDVSA KLPESGSSSG LVATNSKGKK QKAKNSQGPG LSSTSSNVAN
0901: LADSFNEQSQ SLNHPMADLL PQLLALQETM TQVMASQKEM QRQLSNAVTG PIVKEGKKLE VALGRMIEKS SKSNADALWA HFQEEAVKNE KALRDHGQQI
1001: MNETTNFTSK ELNAMFEKTM KKEFASVGPT LARVVTPVIE KTVSSAITES FQRGIGDKAV NQLEKSVNSK LETTVARQIQ AQFQTSGRQV LQEGLRSSME
1101: SSVIPSFERS CKTMFEQVDS TLQKGIGKHT SATQQRIDSG QSQLAHTLRE TISSASSVTQ ALNRELAESQ RNRLALTAAG SNPLVTQLSN GPLGALLEKV
1201: EAPMDPTTEL SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISTDTSRKLG WMTDVVTAIN PSDQMIAVHA
1301: RPIFEQVYQI LHHHRNAPGS DVSAVRLIMH VINSLLMSCK
0101: HILALLNNGG AVANQEPSHH NEIARAFPGG SGPIHVPSGK MPKGRRLVGE HAVYDVDVRL QGEIQPQLEV TPITKYGSDP QLVLGRQIAV NKVYICYGLK
0201: GGSIRVLNIN TALRSLFRGH SQRVTDMAFF AEDVHLLASV SLDGKVFVWK ISEGSEGDEQ SQITGKIVVA LQILGEEDTK HPRVCWHCHK QEILVVSIGK
0301: HVLRIDTTKV GRGEVFSAEA PLQCHLDKLI DGVQIVGKHD GEVTDLSMCQ WMTTRLVSSS VDGTVKIWQD RKTQPLVVLR PHDGLPVNSA IFVTSPERPD
0401: HIILITGGPL NREIKIWVSA GEEGWLLPAD TESWRCTQTL DLKSSTEPQA EKAFFNQVIA LSEAGLLLLA NARRNAIYSV HLDYGSSPVE TLMDYLSEFT
0501: VTMPILSFIG TNDHPEEPFV KVYCVQTLAI QQYTLDLFLC MPPPRENVGF EKSDSTVSRE ANLVESTLET SGMKPTELPS VGSVPKPSIL VNRSENANML
0601: SFPAGPASAG ITPPAIVPPN GEPKTSGMPS ETSDVDSAYA PSPQLPLSPR LSSKLSGYHT PVEAFEQVLP HHKLGGKTSS ADYFYVRQTD DVGGRNLDVS
0701: SVEENCRSKD TNVTPDDDVS GIRSPSAFFK QPTHLVTPSE ILMGVSSTEA SITTEDKRDR DANIEEVNND ARGLEVELKE VGEAQTSQNG EINYHETTEN
0801: HTSESRENIF CSQASNLSTE MARDRHPITE GSAIPGDSMA YGQPLQAGDE RGLDSRDVSA KLPESGSSSG LVATNSKGKK QKAKNSQGPG LSSTSSNVAN
0901: LADSFNEQSQ SLNHPMADLL PQLLALQETM TQVMASQKEM QRQLSNAVTG PIVKEGKKLE VALGRMIEKS SKSNADALWA HFQEEAVKNE KALRDHGQQI
1001: MNETTNFTSK ELNAMFEKTM KKEFASVGPT LARVVTPVIE KTVSSAITES FQRGIGDKAV NQLEKSVNSK LETTVARQIQ AQFQTSGRQV LQEGLRSSME
1101: SSVIPSFERS CKTMFEQVDS TLQKGIGKHT SATQQRIDSG QSQLAHTLRE TISSASSVTQ ALNRELAESQ RNRLALTAAG SNPLVTQLSN GPLGALLEKV
1201: EAPMDPTTEL SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL LSLLQQLACD ISTDTSRKLG WMTDVVTAIN PSDQMIAVHA
1301: RPIFEQVYQI LHHHRNAPGS DVSAVRLIMH VINSLLMSCK
Arabidopsis Description
VCRVaricose-related protein [Source:UniProtKB/Swiss-Prot;Acc:Q9LTT9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.